PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
14751-14800 / 86044 show all | |||||||||||||||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l150_m2_e1 | hetalt | 66.6667 | 50.0000 | 100.0000 | 96.5517 | 1 | 1 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l150_m2_e1 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | SNP | tv | map_l150_m2_e1 | * | 98.5152 | 98.6437 | 98.3871 | 78.4497 | 11346 | 156 | 11346 | 186 | 38 | 20.4301 | |
| gduggal-bwafb | SNP | tv | map_l150_m2_e1 | het | 98.0150 | 98.4486 | 97.5853 | 79.8450 | 7234 | 114 | 7234 | 179 | 33 | 18.4358 | |
| gduggal-bwafb | SNP | tv | map_l150_m2_e1 | hetalt | 97.4359 | 95.0000 | 100.0000 | 84.0336 | 19 | 1 | 19 | 0 | 0 | ||
| gduggal-bwafb | SNP | tv | map_l150_m2_e1 | homalt | 99.4171 | 99.0082 | 99.8293 | 75.3205 | 4093 | 41 | 4093 | 7 | 5 | 71.4286 | |
| gduggal-bwaplat | INDEL | D6_15 | map_l150_m2_e1 | * | 75.9124 | 61.1765 | 100.0000 | 96.6858 | 52 | 33 | 52 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | map_l150_m2_e1 | het | 74.6667 | 59.5745 | 100.0000 | 97.7162 | 28 | 19 | 28 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | map_l150_m2_e1 | hetalt | 71.4286 | 55.5556 | 100.0000 | 96.6216 | 5 | 4 | 5 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | map_l150_m2_e1 | homalt | 79.1667 | 65.5172 | 100.0000 | 90.2564 | 19 | 10 | 19 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | C6_15 | map_l150_m2_e1 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C6_15 | map_l150_m2_e1 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C6_15 | map_l150_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C6_15 | map_l150_m2_e1 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | * | map_l150_m2_e1 | * | 71.8972 | 56.3586 | 99.2656 | 96.0740 | 811 | 628 | 811 | 6 | 1 | 16.6667 | |
| gduggal-bwaplat | INDEL | * | map_l150_m2_e1 | het | 75.1678 | 60.6061 | 98.9399 | 96.4527 | 560 | 364 | 560 | 6 | 1 | 16.6667 | |
| gduggal-bwaplat | INDEL | * | map_l150_m2_e1 | hetalt | 64.7059 | 47.8261 | 100.0000 | 98.5430 | 11 | 12 | 11 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | map_l150_m2_e1 | homalt | 65.5738 | 48.7805 | 100.0000 | 94.1449 | 240 | 252 | 240 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | C16_PLUS | map_l150_m2_e1 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C16_PLUS | map_l150_m2_e1 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C16_PLUS | map_l150_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C16_PLUS | map_l150_m2_e1 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C1_5 | map_l150_m2_e1 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | C1_5 | map_l150_m2_e1 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | C1_5 | map_l150_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C1_5 | map_l150_m2_e1 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | D1_5 | map_l150_m2_e1 | * | 73.9130 | 58.9974 | 98.9224 | 95.6603 | 459 | 319 | 459 | 5 | 1 | 20.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l150_m2_e1 | het | 76.1457 | 62.0690 | 98.4802 | 96.0428 | 324 | 198 | 324 | 5 | 1 | 20.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l150_m2_e1 | hetalt | 66.6667 | 50.0000 | 100.0000 | 99.1453 | 4 | 4 | 4 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | map_l150_m2_e1 | homalt | 69.1293 | 52.8226 | 100.0000 | 93.1414 | 131 | 117 | 131 | 0 | 0 | ||
| gduggal-snapfb | INDEL | C16_PLUS | map_l150_m2_e1 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | C16_PLUS | map_l150_m2_e1 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | C16_PLUS | map_l150_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | C16_PLUS | map_l150_m2_e1 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | I6_15 | map_l150_m2_e1 | * | 71.1864 | 77.7778 | 65.6250 | 93.8697 | 21 | 6 | 21 | 11 | 4 | 36.3636 | |
| gduggal-bwavard | INDEL | I6_15 | map_l150_m2_e1 | het | 76.1905 | 100.0000 | 61.5385 | 94.4444 | 16 | 0 | 16 | 10 | 4 | 40.0000 | |
| gduggal-bwavard | INDEL | I6_15 | map_l150_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 3 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | I6_15 | map_l150_m2_e1 | homalt | 71.4286 | 62.5000 | 83.3333 | 88.8889 | 5 | 3 | 5 | 1 | 0 | 0.0000 | |
| gduggal-bwavard | SNP | * | map_l150_m2_e1 | * | 95.0047 | 97.7678 | 92.3934 | 83.1339 | 31491 | 719 | 31083 | 2559 | 143 | 5.5881 | |
| gduggal-bwavard | SNP | * | map_l150_m2_e1 | het | 93.0515 | 97.9865 | 88.5898 | 85.8074 | 19953 | 410 | 19713 | 2539 | 128 | 5.0414 | |
| gduggal-bwavard | SNP | * | map_l150_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 20 | 0 | 0 | 0 | |||
| gduggal-bwavard | SNP | * | map_l150_m2_e1 | homalt | 98.6774 | 97.5564 | 99.8244 | 73.3124 | 11538 | 289 | 11370 | 20 | 15 | 75.0000 | |
| gduggal-snapfb | INDEL | C6_15 | map_l150_m2_e1 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | C6_15 | map_l150_m2_e1 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | C6_15 | map_l150_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | C6_15 | map_l150_m2_e1 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | * | map_l150_m2_e1 | * | 93.6106 | 92.5643 | 94.6809 | 89.9106 | 1332 | 107 | 1335 | 75 | 21 | 28.0000 | |
| gduggal-snapfb | INDEL | * | map_l150_m2_e1 | het | 92.5133 | 91.8831 | 93.1522 | 87.8339 | 849 | 75 | 857 | 63 | 12 | 19.0476 | |
| gduggal-snapfb | INDEL | * | map_l150_m2_e1 | hetalt | 75.9494 | 65.2174 | 90.9091 | 96.8300 | 15 | 8 | 10 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | * | map_l150_m2_e1 | homalt | 96.3955 | 95.1220 | 97.7035 | 92.1035 | 468 | 24 | 468 | 11 | 8 | 72.7273 | |