PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
14251-14300 / 86044 show all | |||||||||||||||
| qzeng-custom | SNP | * | map_l150_m2_e1 | hetalt | 75.0000 | 60.0000 | 100.0000 | 93.7173 | 12 | 8 | 12 | 0 | 0 | ||
| qzeng-custom | SNP | * | map_l150_m2_e1 | homalt | 80.8266 | 68.2422 | 99.1019 | 73.2731 | 8071 | 3756 | 7945 | 72 | 72 | 100.0000 | |
| qzeng-custom | INDEL | D6_15 | map_l150_m2_e1 | * | 84.3557 | 82.3529 | 86.4583 | 93.8184 | 70 | 15 | 83 | 13 | 6 | 46.1538 | |
| qzeng-custom | INDEL | D6_15 | map_l150_m2_e1 | het | 83.6115 | 80.8511 | 86.5672 | 94.8102 | 38 | 9 | 58 | 9 | 3 | 33.3333 | |
| qzeng-custom | INDEL | D6_15 | map_l150_m2_e1 | hetalt | 0.0000 | 77.7778 | 0.0000 | 0.0000 | 7 | 2 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D6_15 | map_l150_m2_e1 | homalt | 86.2069 | 86.2069 | 86.2069 | 88.9313 | 25 | 4 | 25 | 4 | 3 | 75.0000 | |
| qzeng-custom | SNP | tv | map_l150_m2_e1 | * | 83.1087 | 72.8830 | 96.6721 | 87.1352 | 8383 | 3119 | 8366 | 288 | 243 | 84.3750 | |
| qzeng-custom | SNP | tv | map_l150_m2_e1 | het | 83.6864 | 74.4284 | 95.5746 | 89.7620 | 5469 | 1879 | 5464 | 253 | 208 | 82.2134 | |
| qzeng-custom | SNP | tv | map_l150_m2_e1 | hetalt | 75.0000 | 60.0000 | 100.0000 | 93.7173 | 12 | 8 | 12 | 0 | 0 | ||
| qzeng-custom | SNP | tv | map_l150_m2_e1 | homalt | 82.0801 | 70.1984 | 98.8034 | 73.9699 | 2902 | 1232 | 2890 | 35 | 35 | 100.0000 | |
| qzeng-custom | INDEL | I6_15 | map_l150_m2_e1 | * | 61.1354 | 51.8519 | 74.4681 | 94.2402 | 14 | 13 | 35 | 12 | 2 | 16.6667 | |
| qzeng-custom | INDEL | I6_15 | map_l150_m2_e1 | het | 60.0000 | 56.2500 | 64.2857 | 95.4173 | 9 | 7 | 18 | 10 | 2 | 20.0000 | |
| qzeng-custom | INDEL | I6_15 | map_l150_m2_e1 | hetalt | 50.0000 | 33.3333 | 100.0000 | 91.6667 | 1 | 2 | 4 | 0 | 0 | ||
| qzeng-custom | INDEL | I6_15 | map_l150_m2_e1 | homalt | 63.4146 | 50.0000 | 86.6667 | 90.4459 | 4 | 4 | 13 | 2 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I16_PLUS | map_l150_m2_e1 | * | 61.7647 | 63.6364 | 60.0000 | 94.1860 | 7 | 4 | 9 | 6 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I16_PLUS | map_l150_m2_e1 | het | 69.7674 | 83.3333 | 60.0000 | 94.3182 | 5 | 1 | 6 | 4 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I16_PLUS | map_l150_m2_e1 | hetalt | 0.0000 | 0.0000 | 100.0000 | 95.6522 | 0 | 2 | 1 | 0 | 0 | ||
| qzeng-custom | INDEL | I16_PLUS | map_l150_m2_e1 | homalt | 57.1429 | 66.6667 | 50.0000 | 93.2203 | 2 | 1 | 2 | 2 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I1_5 | map_l150_m2_e1 | * | 76.1376 | 62.5235 | 97.3306 | 93.7113 | 332 | 199 | 474 | 13 | 8 | 61.5385 | |
| qzeng-custom | INDEL | I1_5 | map_l150_m2_e1 | het | 76.0534 | 62.7760 | 96.4539 | 95.2493 | 199 | 118 | 272 | 10 | 6 | 60.0000 | |
| qzeng-custom | INDEL | I1_5 | map_l150_m2_e1 | hetalt | 75.0000 | 60.0000 | 100.0000 | 94.8905 | 6 | 4 | 7 | 0 | 0 | ||
| qzeng-custom | INDEL | I1_5 | map_l150_m2_e1 | homalt | 76.2868 | 62.2549 | 98.4848 | 88.1508 | 127 | 77 | 195 | 3 | 2 | 66.6667 | |
| qzeng-custom | SNP | ti | map_l150_m2_e1 | * | 80.4222 | 68.7352 | 96.8977 | 87.0560 | 14244 | 6479 | 14149 | 453 | 387 | 85.4305 | |
| qzeng-custom | SNP | ti | map_l150_m2_e1 | het | 80.5961 | 69.6581 | 95.6089 | 89.9144 | 9066 | 3949 | 9036 | 415 | 349 | 84.0964 | |
| qzeng-custom | SNP | ti | map_l150_m2_e1 | hetalt | 75.0000 | 60.0000 | 100.0000 | 92.6829 | 9 | 6 | 9 | 0 | 0 | ||
| qzeng-custom | SNP | ti | map_l150_m2_e1 | homalt | 80.1365 | 67.1910 | 99.2610 | 72.9055 | 5169 | 2524 | 5104 | 38 | 38 | 100.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l150_m2_e1 | * | 76.1905 | 72.7273 | 80.0000 | 90.4762 | 8 | 3 | 8 | 2 | 1 | 50.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l150_m2_e1 | het | 76.9231 | 83.3333 | 71.4286 | 90.1408 | 5 | 1 | 5 | 2 | 1 | 50.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l150_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 71.4286 | 2 | 0 | 2 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I16_PLUS | map_l150_m2_e1 | homalt | 50.0000 | 33.3333 | 100.0000 | 96.2963 | 1 | 2 | 1 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I1_5 | map_l150_m2_e1 | * | 98.6792 | 98.4934 | 98.8658 | 90.1251 | 523 | 8 | 523 | 6 | 1 | 16.6667 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l150_m2_e1 | het | 98.4127 | 97.7918 | 99.0415 | 90.2735 | 310 | 7 | 310 | 3 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l150_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.2825 | 10 | 0 | 10 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I1_5 | map_l150_m2_e1 | homalt | 99.0244 | 99.5098 | 98.5437 | 88.9840 | 203 | 1 | 203 | 3 | 1 | 33.3333 | |
| ndellapenna-hhga | INDEL | C6_15 | map_l150_m2_e1 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | C6_15 | map_l150_m2_e1 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ndellapenna-hhga | INDEL | C6_15 | map_l150_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | C6_15 | map_l150_m2_e1 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | SNP | * | map_l150_m2_e1 | * | 99.0401 | 98.3421 | 99.7481 | 73.9108 | 31676 | 534 | 31676 | 80 | 40 | 50.0000 | |
| ndellapenna-hhga | SNP | * | map_l150_m2_e1 | het | 98.6659 | 97.6968 | 99.6544 | 74.7044 | 19894 | 469 | 19894 | 69 | 30 | 43.4783 | |
| ndellapenna-hhga | SNP | * | map_l150_m2_e1 | hetalt | 88.8889 | 80.0000 | 100.0000 | 85.8407 | 16 | 4 | 16 | 0 | 0 | ||
| ndellapenna-hhga | SNP | * | map_l150_m2_e1 | homalt | 99.6950 | 99.4842 | 99.9066 | 72.4121 | 11766 | 61 | 11766 | 11 | 10 | 90.9091 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l150_m2_e1 | * | 94.6730 | 92.9412 | 96.4706 | 91.2281 | 79 | 6 | 82 | 3 | 2 | 66.6667 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l150_m2_e1 | het | 95.9849 | 95.7447 | 96.2264 | 91.7317 | 45 | 2 | 51 | 2 | 1 | 50.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l150_m2_e1 | hetalt | 80.0000 | 66.6667 | 100.0000 | 94.6429 | 6 | 3 | 3 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D6_15 | map_l150_m2_e1 | homalt | 96.5517 | 96.5517 | 96.5517 | 89.3382 | 28 | 1 | 28 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l150_m2_e1 | * | 94.4444 | 94.4444 | 94.4444 | 93.1034 | 17 | 1 | 17 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l150_m2_e1 | het | 96.9697 | 100.0000 | 94.1176 | 91.0526 | 16 | 0 | 16 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l150_m2_e1 | hetalt | 66.6667 | 50.0000 | 100.0000 | 90.9091 | 1 | 1 | 1 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D16_PLUS | map_l150_m2_e1 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||