PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
13101-13150 / 86044 show all | |||||||||||||||
| jmaeng-gatk | INDEL | I1_5 | map_l250_m0_e0 | * | 89.3617 | 87.5000 | 91.3043 | 98.8990 | 21 | 3 | 21 | 2 | 1 | 50.0000 | |
| jmaeng-gatk | INDEL | I1_5 | map_l250_m0_e0 | het | 85.7143 | 80.0000 | 92.3077 | 99.2499 | 12 | 3 | 12 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I1_5 | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jmaeng-gatk | INDEL | I1_5 | map_l250_m0_e0 | homalt | 94.7368 | 100.0000 | 90.0000 | 96.7638 | 9 | 0 | 9 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | map_l250_m0_e0 | * | 50.0000 | 100.0000 | 33.3333 | 98.1013 | 1 | 0 | 1 | 2 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | map_l250_m0_e0 | het | 50.0000 | 100.0000 | 33.3333 | 97.7273 | 1 | 0 | 1 | 2 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jmaeng-gatk | INDEL | D16_PLUS | map_l250_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jmaeng-gatk | INDEL | D1_5 | map_l250_m0_e0 | * | 90.0000 | 97.8261 | 83.3333 | 98.2813 | 45 | 1 | 45 | 9 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | map_l250_m0_e0 | * | 0.0000 | 0.0000 | 99.4475 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| jmaeng-gatk | INDEL | I16_PLUS | map_l250_m0_e0 | het | 0.0000 | 0.0000 | 99.0196 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| jmaeng-gatk | INDEL | I16_PLUS | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jmaeng-gatk | INDEL | I16_PLUS | map_l250_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jmaeng-gatk | SNP | * | map_l250_m0_e0 | * | 63.1215 | 46.9789 | 96.1649 | 98.1269 | 1003 | 1132 | 1003 | 40 | 3 | 7.5000 | |
| jmaeng-gatk | SNP | * | map_l250_m0_e0 | het | 63.5159 | 47.7424 | 94.8549 | 98.4462 | 719 | 787 | 719 | 39 | 2 | 5.1282 | |
| jmaeng-gatk | SNP | * | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jmaeng-gatk | SNP | * | map_l250_m0_e0 | homalt | 62.1444 | 45.1510 | 99.6491 | 95.8315 | 284 | 345 | 284 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | D1_5 | map_l250_m0_e0 | het | 86.4865 | 96.9697 | 78.0488 | 98.4139 | 32 | 1 | 32 | 9 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D1_5 | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jmaeng-gatk | INDEL | D1_5 | map_l250_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.3415 | 13 | 0 | 13 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D6_15 | map_l250_m0_e0 | * | 100.0000 | 100.0000 | 100.0000 | 98.5612 | 6 | 0 | 6 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D6_15 | map_l250_m0_e0 | het | 100.0000 | 100.0000 | 100.0000 | 98.7179 | 4 | 0 | 4 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D6_15 | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jmaeng-gatk | INDEL | D6_15 | map_l250_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.3684 | 2 | 0 | 2 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I6_15 | map_l250_m0_e0 | * | 0.0000 | 0.0000 | 99.4253 | 0 | 1 | 0 | 1 | 1 | 100.0000 | ||
| jmaeng-gatk | INDEL | I6_15 | map_l250_m0_e0 | het | 0.0000 | 0.0000 | 99.2424 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| jmaeng-gatk | INDEL | I6_15 | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jmaeng-gatk | INDEL | I6_15 | map_l250_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | C16_PLUS | map_l250_m0_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | C16_PLUS | map_l250_m0_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ltrigg-rtg1 | INDEL | C16_PLUS | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | C16_PLUS | map_l250_m0_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | * | map_l250_m0_e0 | * | 92.2045 | 93.3489 | 91.0878 | 95.0147 | 1993 | 142 | 1993 | 195 | 31 | 15.8974 | |
| jpowers-varprowl | SNP | * | map_l250_m0_e0 | het | 90.2202 | 92.4967 | 88.0531 | 95.2498 | 1393 | 113 | 1393 | 189 | 29 | 15.3439 | |
| jpowers-varprowl | SNP | * | map_l250_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | * | map_l250_m0_e0 | homalt | 97.1660 | 95.3895 | 99.0099 | 94.2749 | 600 | 29 | 600 | 6 | 2 | 33.3333 | |
| jpowers-varprowl | INDEL | I16_PLUS | map_l250_m0_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jpowers-varprowl | INDEL | I16_PLUS | map_l250_m0_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jpowers-varprowl | INDEL | I16_PLUS | map_l250_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | I16_PLUS | map_l250_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jpowers-varprowl | INDEL | I6_15 | map_l250_m0_e0 | * | 100.0000 | 100.0000 | 100.0000 | 98.7500 | 1 | 0 | 1 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I6_15 | map_l250_m0_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jpowers-varprowl | INDEL | I6_15 | map_l250_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | I6_15 | map_l250_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 94.1176 | 1 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | * | map_l250_m0_e0 | * | 93.3679 | 89.7436 | 97.2973 | 95.8843 | 70 | 8 | 72 | 2 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | * | map_l250_m0_e0 | het | 90.0391 | 84.9057 | 95.8333 | 93.7173 | 45 | 8 | 46 | 2 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | * | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | * | map_l250_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.9977 | 25 | 0 | 26 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I1_5 | map_l250_m0_e0 | * | 91.6667 | 91.6667 | 91.6667 | 98.0998 | 22 | 2 | 22 | 2 | 1 | 50.0000 | |
| jpowers-varprowl | INDEL | I1_5 | map_l250_m0_e0 | het | 90.3226 | 93.3333 | 87.5000 | 98.4848 | 14 | 1 | 14 | 2 | 1 | 50.0000 | |