PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
12951-13000 / 86044 show all | |||||||||||||||
| egarrison-hhga | INDEL | I16_PLUS | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| egarrison-hhga | INDEL | I16_PLUS | map_l250_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| egarrison-hhga | INDEL | I6_15 | map_l250_m0_e0 | * | 100.0000 | 100.0000 | 100.0000 | 98.9583 | 1 | 0 | 1 | 0 | 0 | ||
| egarrison-hhga | INDEL | I6_15 | map_l250_m0_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| egarrison-hhga | INDEL | I6_15 | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| egarrison-hhga | INDEL | I6_15 | map_l250_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.0000 | 1 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | * | map_l250_m0_e0 | * | 96.3245 | 97.4359 | 95.2381 | 98.9802 | 76 | 2 | 140 | 7 | 4 | 57.1429 | |
| eyeh-varpipe | INDEL | * | map_l250_m0_e0 | het | 95.3582 | 96.2264 | 94.5055 | 96.7254 | 51 | 2 | 86 | 5 | 2 | 40.0000 | |
| eyeh-varpipe | INDEL | * | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | * | map_l250_m0_e0 | homalt | 98.1818 | 100.0000 | 96.4286 | 97.2305 | 25 | 0 | 54 | 2 | 2 | 100.0000 | |
| egarrison-hhga | INDEL | I1_5 | map_l250_m0_e0 | * | 91.6667 | 91.6667 | 91.6667 | 98.0815 | 22 | 2 | 22 | 2 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | I1_5 | map_l250_m0_e0 | het | 86.6667 | 86.6667 | 86.6667 | 98.2639 | 13 | 2 | 13 | 2 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | I1_5 | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| egarrison-hhga | INDEL | I1_5 | map_l250_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.2810 | 9 | 0 | 9 | 0 | 0 | ||
| egarrison-hhga | SNP | tv | map_l250_m0_e0 | * | 97.8160 | 96.6013 | 99.0617 | 92.0849 | 739 | 26 | 739 | 7 | 3 | 42.8571 | |
| egarrison-hhga | SNP | tv | map_l250_m0_e0 | het | 97.4268 | 95.9790 | 98.9189 | 91.9902 | 549 | 23 | 549 | 6 | 2 | 33.3333 | |
| egarrison-hhga | SNP | tv | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| egarrison-hhga | SNP | tv | map_l250_m0_e0 | homalt | 98.9583 | 98.4456 | 99.4764 | 92.2735 | 190 | 3 | 190 | 1 | 1 | 100.0000 | |
| ckim-vqsr | INDEL | I1_5 | map_l250_m0_e0 | * | 86.2745 | 91.6667 | 81.4815 | 98.6855 | 22 | 2 | 22 | 5 | 1 | 20.0000 | |
| ckim-vqsr | INDEL | I1_5 | map_l250_m0_e0 | het | 81.2500 | 86.6667 | 76.4706 | 98.9875 | 13 | 2 | 13 | 4 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I1_5 | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-vqsr | INDEL | I1_5 | map_l250_m0_e0 | homalt | 94.7368 | 100.0000 | 90.0000 | 96.9880 | 9 | 0 | 9 | 1 | 1 | 100.0000 | |
| ckim-vqsr | INDEL | I6_15 | map_l250_m0_e0 | * | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| ckim-vqsr | INDEL | I6_15 | map_l250_m0_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-vqsr | INDEL | I6_15 | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-vqsr | INDEL | I6_15 | map_l250_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| ckim-vqsr | INDEL | D1_5 | map_l250_m0_e0 | * | 88.4615 | 100.0000 | 79.3103 | 98.1481 | 46 | 0 | 46 | 12 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D1_5 | map_l250_m0_e0 | het | 84.6154 | 100.0000 | 73.3333 | 98.2353 | 33 | 0 | 33 | 12 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D1_5 | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-vqsr | INDEL | D1_5 | map_l250_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.5000 | 13 | 0 | 13 | 0 | 0 | ||
| ckim-vqsr | INDEL | C1_5 | map_l250_m0_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | INDEL | C1_5 | map_l250_m0_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | INDEL | C1_5 | map_l250_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | INDEL | C1_5 | map_l250_m0_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | INDEL | D16_PLUS | map_l250_m0_e0 | * | 66.6667 | 100.0000 | 50.0000 | 98.8235 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | map_l250_m0_e0 | het | 66.6667 | 100.0000 | 50.0000 | 98.5294 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-vqsr | INDEL | D16_PLUS | map_l250_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-vqsr | INDEL | I16_PLUS | map_l250_m0_e0 | * | 0.0000 | 0.0000 | 99.4565 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| ckim-vqsr | INDEL | I16_PLUS | map_l250_m0_e0 | het | 0.0000 | 0.0000 | 98.9130 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| ckim-vqsr | INDEL | I16_PLUS | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-vqsr | INDEL | I16_PLUS | map_l250_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-vqsr | INDEL | C6_15 | map_l250_m0_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | INDEL | C6_15 | map_l250_m0_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | INDEL | C6_15 | map_l250_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | INDEL | C6_15 | map_l250_m0_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | INDEL | D6_15 | map_l250_m0_e0 | * | 100.0000 | 100.0000 | 100.0000 | 98.5782 | 6 | 0 | 6 | 0 | 0 | ||
| ckim-vqsr | INDEL | D6_15 | map_l250_m0_e0 | het | 100.0000 | 100.0000 | 100.0000 | 98.7179 | 4 | 0 | 4 | 0 | 0 | ||
| ckim-vqsr | INDEL | D6_15 | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-vqsr | INDEL | D6_15 | map_l250_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.4684 | 2 | 0 | 2 | 0 | 0 | ||