PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
12651-12700 / 86044 show all | |||||||||||||||
| gduggal-bwaplat | INDEL | I1_5 | map_l250_m0_e0 | * | 40.0000 | 25.0000 | 100.0000 | 99.6783 | 6 | 18 | 6 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | map_l250_m0_e0 | het | 50.0000 | 33.3333 | 100.0000 | 99.6464 | 5 | 10 | 5 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | I1_5 | map_l250_m0_e0 | homalt | 20.0000 | 11.1111 | 100.0000 | 99.7067 | 1 | 8 | 1 | 0 | 0 | ||
| gduggal-bwaplat | SNP | ti | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | SNP | ti | map_l250_m0_e0 | homalt | 45.6637 | 29.5872 | 100.0000 | 97.2939 | 129 | 307 | 129 | 0 | 0 | ||
| gduggal-bwaplat | SNP | tv | map_l250_m0_e0 | * | 38.0148 | 23.5294 | 98.9011 | 99.0675 | 180 | 585 | 180 | 2 | 0 | 0.0000 | |
| gduggal-bwaplat | SNP | tv | map_l250_m0_e0 | het | 38.3099 | 23.7762 | 98.5507 | 99.1755 | 136 | 436 | 136 | 2 | 0 | 0.0000 | |
| gduggal-bwaplat | SNP | tv | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | SNP | tv | map_l250_m0_e0 | homalt | 37.1308 | 22.7979 | 100.0000 | 98.3841 | 44 | 149 | 44 | 0 | 0 | ||
| gduggal-bwafb | INDEL | C6_15 | map_l250_m0_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | C6_15 | map_l250_m0_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | C6_15 | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | C6_15 | map_l250_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | * | map_l250_m0_e0 | * | 94.1935 | 93.5897 | 94.8052 | 97.6388 | 73 | 5 | 73 | 4 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | * | map_l250_m0_e0 | het | 92.4528 | 92.4528 | 92.4528 | 97.3042 | 49 | 4 | 49 | 4 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | * | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | * | map_l250_m0_e0 | homalt | 97.9592 | 96.0000 | 100.0000 | 98.0551 | 24 | 1 | 24 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I6_15 | map_l250_m0_e0 | * | 100.0000 | 100.0000 | 100.0000 | 96.4602 | 1 | 0 | 4 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I6_15 | map_l250_m0_e0 | het | 0.0000 | 0.0000 | 100.0000 | 96.4912 | 0 | 0 | 2 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I6_15 | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | I6_15 | map_l250_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 95.8333 | 1 | 0 | 2 | 0 | 0 | ||
| eyeh-varpipe | SNP | * | map_l250_m0_e0 | * | 98.0582 | 99.2506 | 96.8941 | 94.2786 | 2119 | 16 | 2059 | 66 | 4 | 6.0606 | |
| eyeh-varpipe | SNP | * | map_l250_m0_e0 | het | 97.4164 | 99.0704 | 95.8167 | 94.5377 | 1492 | 14 | 1443 | 63 | 2 | 3.1746 | |
| eyeh-varpipe | SNP | * | map_l250_m0_e0 | hetalt | 0.0000 | 0.0000 | 85.7143 | 93.5185 | 0 | 0 | 6 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | * | map_l250_m0_e0 | homalt | 99.6776 | 99.6820 | 99.6732 | 93.5320 | 627 | 2 | 610 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | SNP | tv | map_l250_m0_e0 | * | 97.7391 | 99.2157 | 96.3057 | 94.5189 | 759 | 6 | 756 | 29 | 3 | 10.3448 | |
| eyeh-varpipe | SNP | tv | map_l250_m0_e0 | het | 97.3196 | 99.3007 | 95.4160 | 94.4664 | 568 | 4 | 562 | 27 | 2 | 7.4074 | |
| eyeh-varpipe | SNP | tv | map_l250_m0_e0 | hetalt | 0.0000 | 0.0000 | 66.6667 | 95.7746 | 0 | 0 | 2 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | tv | map_l250_m0_e0 | homalt | 99.2221 | 98.9637 | 99.4819 | 94.6493 | 191 | 2 | 192 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | C1_5 | map_l250_m0_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | C1_5 | map_l250_m0_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | C1_5 | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | C1_5 | map_l250_m0_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| eyeh-varpipe | SNP | ti | map_l250_m0_e0 | * | 98.2427 | 99.2701 | 97.2364 | 94.1737 | 1360 | 10 | 1337 | 38 | 1 | 2.6316 | |
| eyeh-varpipe | SNP | ti | map_l250_m0_e0 | het | 97.4777 | 98.9293 | 96.0680 | 94.6040 | 924 | 10 | 904 | 37 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | ti | map_l250_m0_e0 | hetalt | 0.0000 | 0.0000 | 100.0000 | 94.3182 | 0 | 0 | 5 | 0 | 0 | ||
| eyeh-varpipe | SNP | ti | map_l250_m0_e0 | homalt | 99.8833 | 100.0000 | 99.7669 | 92.9359 | 436 | 0 | 428 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | C16_PLUS | map_l250_m0_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwafb | INDEL | C16_PLUS | map_l250_m0_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwafb | INDEL | C16_PLUS | map_l250_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwafb | INDEL | C16_PLUS | map_l250_m0_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | D6_15 | map_l250_m0_e0 | * | 0.0000 | 100.0000 | 0 | 6 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | D6_15 | map_l250_m0_e0 | het | 0.0000 | 100.0000 | 0 | 4 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | D6_15 | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | D6_15 | map_l250_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 2 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | C6_15 | map_l250_m0_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C6_15 | map_l250_m0_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C6_15 | map_l250_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C6_15 | map_l250_m0_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||