PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
12551-12600 / 86044 show all | |||||||||||||||
| anovak-vg | SNP | * | map_l250_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | SNP | * | map_l250_m0_e0 | homalt | 81.4814 | 69.6343 | 98.1859 | 93.8468 | 438 | 191 | 433 | 8 | 6 | 75.0000 | |
| astatham-gatk | INDEL | * | map_l250_m0_e0 | * | 90.3614 | 96.1538 | 85.2273 | 97.7873 | 75 | 3 | 75 | 13 | 2 | 15.3846 | |
| astatham-gatk | INDEL | * | map_l250_m0_e0 | het | 88.6957 | 96.2264 | 82.2581 | 97.8268 | 51 | 2 | 51 | 11 | 1 | 9.0909 | |
| astatham-gatk | INDEL | * | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| astatham-gatk | INDEL | * | map_l250_m0_e0 | homalt | 94.1176 | 96.0000 | 92.3077 | 97.4806 | 24 | 1 | 24 | 2 | 1 | 50.0000 | |
| anovak-vg | INDEL | I6_15 | map_l250_m0_e0 | * | 66.6667 | 100.0000 | 50.0000 | 98.2143 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| anovak-vg | INDEL | I6_15 | map_l250_m0_e0 | het | 0.0000 | 0.0000 | 98.7179 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| anovak-vg | INDEL | I6_15 | map_l250_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | I6_15 | map_l250_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.0588 | 1 | 0 | 1 | 0 | 0 | ||
| anovak-vg | SNP | tv | map_l250_m0_e0 | * | 73.9996 | 77.6471 | 70.6794 | 95.9856 | 594 | 171 | 593 | 246 | 53 | 21.5447 | |
| anovak-vg | SNP | tv | map_l250_m0_e0 | het | 72.5540 | 81.1189 | 65.6250 | 96.1522 | 464 | 108 | 462 | 242 | 50 | 20.6612 | |
| anovak-vg | SNP | tv | map_l250_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | SNP | tv | map_l250_m0_e0 | homalt | 79.5181 | 67.3575 | 97.0370 | 94.8157 | 130 | 63 | 131 | 4 | 3 | 75.0000 | |
| asubramanian-gatk | SNP | tv | map_l250_m0_e0 | * | 28.2828 | 16.4706 | 100.0000 | 99.1823 | 126 | 639 | 126 | 0 | 0 | ||
| asubramanian-gatk | SNP | tv | map_l250_m0_e0 | het | 28.2282 | 16.4336 | 100.0000 | 99.2644 | 94 | 478 | 94 | 0 | 0 | ||
| asubramanian-gatk | SNP | tv | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| asubramanian-gatk | SNP | tv | map_l250_m0_e0 | homalt | 28.4444 | 16.5803 | 100.0000 | 98.7688 | 32 | 161 | 32 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I6_15 | map_l250_m0_e0 | * | 0.0000 | 0.0000 | 99.2806 | 0 | 1 | 0 | 1 | 1 | 100.0000 | ||
| asubramanian-gatk | INDEL | I6_15 | map_l250_m0_e0 | het | 0.0000 | 0.0000 | 98.9691 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| asubramanian-gatk | INDEL | I6_15 | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| asubramanian-gatk | INDEL | I6_15 | map_l250_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| asubramanian-gatk | INDEL | D1_5 | map_l250_m0_e0 | * | 83.1683 | 91.3043 | 76.3636 | 97.8209 | 42 | 4 | 42 | 13 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | D1_5 | map_l250_m0_e0 | het | 80.0000 | 90.9091 | 71.4286 | 97.8582 | 30 | 3 | 30 | 12 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | D1_5 | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| asubramanian-gatk | INDEL | D1_5 | map_l250_m0_e0 | homalt | 92.3077 | 92.3077 | 92.3077 | 97.4206 | 12 | 1 | 12 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I1_5 | map_l250_m0_e0 | * | 86.9565 | 83.3333 | 90.9091 | 98.6155 | 20 | 4 | 20 | 2 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I1_5 | map_l250_m0_e0 | het | 82.7586 | 80.0000 | 85.7143 | 98.8362 | 12 | 3 | 12 | 2 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I1_5 | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| asubramanian-gatk | INDEL | I1_5 | map_l250_m0_e0 | homalt | 94.1176 | 88.8889 | 100.0000 | 97.6048 | 8 | 1 | 8 | 0 | 0 | ||
| asubramanian-gatk | SNP | ti | map_l250_m0_e0 | * | 32.2936 | 19.2701 | 99.6226 | 98.9715 | 264 | 1106 | 264 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | SNP | ti | map_l250_m0_e0 | het | 33.4817 | 20.1285 | 99.4709 | 99.1011 | 188 | 746 | 188 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | SNP | ti | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| asubramanian-gatk | SNP | ti | map_l250_m0_e0 | homalt | 29.6875 | 17.4312 | 100.0000 | 98.3895 | 76 | 360 | 76 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | map_l250_m0_e0 | * | 90.9091 | 83.3333 | 100.0000 | 98.6264 | 5 | 1 | 5 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | map_l250_m0_e0 | het | 100.0000 | 100.0000 | 100.0000 | 98.4436 | 4 | 0 | 4 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| asubramanian-gatk | INDEL | D6_15 | map_l250_m0_e0 | homalt | 66.6667 | 50.0000 | 100.0000 | 98.7179 | 1 | 1 | 1 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I16_PLUS | map_l250_m0_e0 | * | 0.0000 | 0.0000 | 99.2537 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | I16_PLUS | map_l250_m0_e0 | het | 0.0000 | 0.0000 | 98.6486 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | I16_PLUS | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| asubramanian-gatk | INDEL | I16_PLUS | map_l250_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| asubramanian-gatk | SNP | * | map_l250_m0_e0 | * | 30.8789 | 18.2670 | 99.7442 | 99.0504 | 390 | 1745 | 390 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | SNP | * | map_l250_m0_e0 | het | 31.5260 | 18.7251 | 99.6466 | 99.1633 | 282 | 1224 | 282 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | SNP | * | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| asubramanian-gatk | SNP | * | map_l250_m0_e0 | homalt | 29.3080 | 17.1701 | 100.0000 | 98.5248 | 108 | 521 | 108 | 0 | 0 | ||
| gduggal-snapfb | SNP | ti | map_l250_m0_e0 | * | 93.6877 | 92.6277 | 94.7722 | 93.6399 | 1269 | 101 | 1269 | 70 | 31 | 44.2857 | |
| gduggal-snapfb | SNP | ti | map_l250_m0_e0 | het | 92.8266 | 92.8266 | 92.8266 | 90.7653 | 867 | 67 | 867 | 67 | 29 | 43.2836 | |
| gduggal-snapfb | SNP | ti | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | SNP | ti | map_l250_m0_e0 | homalt | 95.6005 | 92.2018 | 99.2593 | 96.2789 | 402 | 34 | 402 | 3 | 2 | 66.6667 | |