PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
12301-12350 / 86044 show all | |||||||||||||||
| asubramanian-gatk | SNP | * | map_l250_m1_e0 | * | 30.3884 | 17.9313 | 99.5388 | 98.3683 | 1295 | 5927 | 1295 | 6 | 1 | 16.6667 | |
| asubramanian-gatk | SNP | * | map_l250_m1_e0 | het | 32.3296 | 19.3060 | 99.3506 | 98.5655 | 918 | 3837 | 918 | 6 | 1 | 16.6667 | |
| asubramanian-gatk | SNP | * | map_l250_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 4 | 0 | 0 | 0 | ||||
| asubramanian-gatk | SNP | * | map_l250_m1_e0 | homalt | 26.5493 | 15.3065 | 100.0000 | 97.5301 | 377 | 2086 | 377 | 0 | 0 | ||
| asubramanian-gatk | SNP | ti | map_l250_m1_e0 | * | 32.0381 | 19.0871 | 99.6579 | 98.2478 | 874 | 3705 | 874 | 3 | 1 | 33.3333 | |
| asubramanian-gatk | SNP | ti | map_l250_m1_e0 | het | 33.8831 | 20.4178 | 99.5074 | 98.4836 | 606 | 2362 | 606 | 3 | 1 | 33.3333 | |
| asubramanian-gatk | SNP | ti | map_l250_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 4 | 0 | 0 | 0 | ||||
| asubramanian-gatk | SNP | ti | map_l250_m1_e0 | homalt | 28.5867 | 16.6770 | 100.0000 | 97.2814 | 268 | 1339 | 268 | 0 | 0 | ||
| asubramanian-gatk | SNP | tv | map_l250_m1_e0 | * | 27.4267 | 15.9048 | 99.5272 | 98.5741 | 421 | 2226 | 421 | 2 | 0 | 0.0000 | |
| asubramanian-gatk | SNP | tv | map_l250_m1_e0 | het | 29.7001 | 17.4594 | 99.3631 | 98.7032 | 312 | 1475 | 312 | 2 | 0 | 0.0000 | |
| asubramanian-gatk | SNP | tv | map_l250_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 4 | 0 | 0 | 0 | ||||
| asubramanian-gatk | SNP | tv | map_l250_m1_e0 | homalt | 22.5907 | 12.7336 | 100.0000 | 97.9792 | 109 | 747 | 109 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | * | map_l250_m1_e0 | * | 95.9612 | 97.3770 | 94.5860 | 95.9242 | 297 | 8 | 297 | 17 | 4 | 23.5294 | |
| bgallagher-sentieon | INDEL | * | map_l250_m1_e0 | het | 94.8454 | 96.8421 | 92.9293 | 96.3327 | 184 | 6 | 184 | 14 | 2 | 14.2857 | |
| bgallagher-sentieon | INDEL | * | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.7033 | 6 | 0 | 6 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | * | map_l250_m1_e0 | homalt | 97.7169 | 98.1651 | 97.2727 | 94.8187 | 107 | 2 | 107 | 3 | 2 | 66.6667 | |
| bgallagher-sentieon | INDEL | C1_5 | map_l250_m1_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | C1_5 | map_l250_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | C1_5 | map_l250_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | C1_5 | map_l250_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | C6_15 | map_l250_m1_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | C6_15 | map_l250_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | C6_15 | map_l250_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | C6_15 | map_l250_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | D16_PLUS | map_l250_m1_e0 | * | 80.0000 | 100.0000 | 66.6667 | 97.4249 | 4 | 0 | 4 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | map_l250_m1_e0 | het | 75.0000 | 100.0000 | 60.0000 | 97.0930 | 3 | 0 | 3 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.7500 | 1 | 0 | 1 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D16_PLUS | map_l250_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| bgallagher-sentieon | INDEL | C16_PLUS | map_l250_m1_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | C16_PLUS | map_l250_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | C16_PLUS | map_l250_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | C16_PLUS | map_l250_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | D1_5 | map_l250_m1_e0 | * | 97.4212 | 99.4152 | 95.5056 | 95.3670 | 170 | 1 | 170 | 8 | 1 | 12.5000 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l250_m1_e0 | het | 96.5217 | 100.0000 | 93.2773 | 95.6962 | 111 | 0 | 111 | 8 | 1 | 12.5000 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.1429 | 3 | 0 | 3 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D1_5 | map_l250_m1_e0 | homalt | 99.1150 | 98.2456 | 100.0000 | 94.2387 | 56 | 1 | 56 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D6_15 | map_l250_m1_e0 | * | 100.0000 | 100.0000 | 100.0000 | 96.9595 | 18 | 0 | 18 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D6_15 | map_l250_m1_e0 | het | 100.0000 | 100.0000 | 100.0000 | 97.3105 | 11 | 0 | 11 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D6_15 | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.9184 | 2 | 0 | 2 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D6_15 | map_l250_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.2687 | 5 | 0 | 5 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I16_PLUS | map_l250_m1_e0 | * | 50.0000 | 100.0000 | 33.3333 | 98.8281 | 1 | 0 | 1 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | map_l250_m1_e0 | het | 66.6667 | 100.0000 | 50.0000 | 98.3471 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | map_l250_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| bgallagher-sentieon | INDEL | I16_PLUS | map_l250_m1_e0 | homalt | 0.0000 | 0.0000 | 99.2537 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| bgallagher-sentieon | INDEL | I1_5 | map_l250_m1_e0 | * | 95.7346 | 95.2830 | 96.1905 | 95.9350 | 101 | 5 | 101 | 4 | 2 | 50.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | map_l250_m1_e0 | het | 94.0171 | 91.6667 | 96.4912 | 96.7410 | 55 | 5 | 55 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.6744 | 2 | 0 | 2 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I1_5 | map_l250_m1_e0 | homalt | 97.7778 | 100.0000 | 95.6522 | 93.8503 | 44 | 0 | 44 | 2 | 2 | 100.0000 | |
| bgallagher-sentieon | SNP | * | map_l250_m1_e0 | * | 98.3858 | 98.7400 | 98.0341 | 88.9251 | 7131 | 91 | 7131 | 143 | 31 | 21.6783 | |
| bgallagher-sentieon | SNP | * | map_l250_m1_e0 | het | 97.9332 | 98.6540 | 97.2228 | 90.1965 | 4691 | 64 | 4691 | 134 | 24 | 17.9104 | |