PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
12101-12150 / 86044 show all | |||||||||||||||
| hfeng-pmm1 | INDEL | C16_PLUS | map_l250_m1_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C16_PLUS | map_l250_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C16_PLUS | map_l250_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C16_PLUS | map_l250_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C1_5 | map_l250_m1_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C1_5 | map_l250_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C1_5 | map_l250_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C1_5 | map_l250_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | * | map_l250_m1_e0 | * | 95.6954 | 94.7541 | 96.6555 | 94.7800 | 289 | 16 | 289 | 10 | 3 | 30.0000 | |
| hfeng-pmm1 | INDEL | * | map_l250_m1_e0 | het | 94.6524 | 93.1579 | 96.1957 | 95.0297 | 177 | 13 | 177 | 7 | 1 | 14.2857 | |
| hfeng-pmm1 | INDEL | * | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.1831 | 6 | 0 | 6 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | * | map_l250_m1_e0 | homalt | 97.2477 | 97.2477 | 97.2477 | 93.9879 | 106 | 3 | 106 | 3 | 2 | 66.6667 | |
| hfeng-pmm1 | INDEL | C6_15 | map_l250_m1_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C6_15 | map_l250_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C6_15 | map_l250_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C6_15 | map_l250_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | D16_PLUS | map_l250_m1_e0 | * | 80.0000 | 100.0000 | 66.6667 | 95.5224 | 4 | 0 | 4 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | map_l250_m1_e0 | het | 75.0000 | 100.0000 | 60.0000 | 94.3820 | 3 | 0 | 3 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.8571 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D16_PLUS | map_l250_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm1 | INDEL | D1_5 | map_l250_m1_e0 | * | 97.0060 | 94.7368 | 99.3865 | 93.6477 | 162 | 9 | 162 | 1 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l250_m1_e0 | het | 96.2963 | 93.6937 | 99.0476 | 93.5858 | 104 | 7 | 104 | 1 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.6000 | 3 | 0 | 3 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D1_5 | map_l250_m1_e0 | homalt | 98.2143 | 96.4912 | 100.0000 | 93.1592 | 55 | 2 | 55 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D6_15 | map_l250_m1_e0 | * | 100.0000 | 100.0000 | 100.0000 | 95.1482 | 18 | 0 | 18 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D6_15 | map_l250_m1_e0 | het | 100.0000 | 100.0000 | 100.0000 | 95.0673 | 11 | 0 | 11 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D6_15 | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.0000 | 2 | 0 | 2 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D6_15 | map_l250_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 94.8980 | 5 | 0 | 5 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I6_15 | map_l250_m1_e0 | * | 66.6667 | 57.1429 | 80.0000 | 97.7169 | 4 | 3 | 4 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | I6_15 | map_l250_m1_e0 | het | 57.1429 | 50.0000 | 66.6667 | 97.7273 | 2 | 2 | 2 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | I6_15 | map_l250_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm1 | INDEL | I6_15 | map_l250_m1_e0 | homalt | 80.0000 | 66.6667 | 100.0000 | 97.0588 | 2 | 1 | 2 | 0 | 0 | ||
| hfeng-pmm1 | SNP | * | map_l250_m1_e0 | * | 98.8139 | 98.6292 | 98.9993 | 88.0247 | 7123 | 99 | 7123 | 72 | 16 | 22.2222 | |
| hfeng-pmm1 | SNP | * | map_l250_m1_e0 | het | 98.4804 | 98.1283 | 98.8350 | 88.4918 | 4666 | 89 | 4666 | 55 | 10 | 18.1818 | |
| hfeng-pmm1 | SNP | * | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.5484 | 4 | 0 | 4 | 0 | 0 | ||
| hfeng-pmm1 | SNP | * | map_l250_m1_e0 | homalt | 99.4527 | 99.5940 | 99.3117 | 86.9979 | 2453 | 10 | 2453 | 17 | 6 | 35.2941 | |
| hfeng-pmm1 | INDEL | I16_PLUS | map_l250_m1_e0 | * | 50.0000 | 100.0000 | 33.3333 | 98.6607 | 1 | 0 | 1 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I16_PLUS | map_l250_m1_e0 | het | 66.6667 | 100.0000 | 50.0000 | 98.1308 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I16_PLUS | map_l250_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm1 | INDEL | I16_PLUS | map_l250_m1_e0 | homalt | 0.0000 | 0.0000 | 99.1228 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| hfeng-pmm1 | INDEL | I1_5 | map_l250_m1_e0 | * | 96.2264 | 96.2264 | 96.2264 | 95.4132 | 102 | 4 | 102 | 4 | 2 | 50.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l250_m1_e0 | het | 94.9153 | 93.3333 | 96.5517 | 96.1691 | 56 | 4 | 56 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.9798 | 2 | 0 | 2 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I1_5 | map_l250_m1_e0 | homalt | 97.7778 | 100.0000 | 95.6522 | 93.4097 | 44 | 0 | 44 | 2 | 2 | 100.0000 | |
| hfeng-pmm1 | SNP | ti | map_l250_m1_e0 | * | 98.9508 | 98.8644 | 99.0374 | 88.1947 | 4527 | 52 | 4527 | 44 | 10 | 22.7273 | |
| hfeng-pmm1 | SNP | ti | map_l250_m1_e0 | het | 98.6671 | 98.5175 | 98.8172 | 88.8014 | 2924 | 44 | 2924 | 35 | 8 | 22.8571 | |
| hfeng-pmm1 | SNP | ti | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 88.8889 | 4 | 0 | 4 | 0 | 0 | ||
| hfeng-pmm1 | SNP | ti | map_l250_m1_e0 | homalt | 99.4712 | 99.5022 | 99.4403 | 86.8852 | 1599 | 8 | 1599 | 9 | 2 | 22.2222 | |
| hfeng-pmm1 | SNP | tv | map_l250_m1_e0 | * | 98.5782 | 98.2244 | 98.9346 | 87.7185 | 2600 | 47 | 2600 | 28 | 6 | 21.4286 | |
| hfeng-pmm1 | SNP | tv | map_l250_m1_e0 | het | 98.1685 | 97.4818 | 98.8649 | 87.9315 | 1742 | 45 | 1742 | 20 | 2 | 10.0000 | |