PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
12051-12100 / 86044 show all | |||||||||||||||
| gduggal-snapplat | INDEL | I1_5 | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.6324 | 2 | 0 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | I1_5 | map_l250_m1_e0 | homalt | 84.6473 | 75.0000 | 97.1429 | 97.2332 | 33 | 11 | 34 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | ti | map_l250_m1_e0 | * | 88.1520 | 82.9439 | 94.0579 | 93.4361 | 3798 | 781 | 3799 | 240 | 126 | 52.5000 | |
| gduggal-snapplat | SNP | ti | map_l250_m1_e0 | het | 88.1746 | 85.1415 | 91.4317 | 94.5451 | 2527 | 441 | 2529 | 237 | 123 | 51.8987 | |
| gduggal-snapplat | SNP | ti | map_l250_m1_e0 | hetalt | 85.7143 | 75.0000 | 100.0000 | 95.0000 | 3 | 1 | 3 | 0 | 0 | ||
| gduggal-snapplat | SNP | ti | map_l250_m1_e0 | homalt | 88.1167 | 78.9048 | 99.7638 | 88.2047 | 1268 | 339 | 1267 | 3 | 3 | 100.0000 | |
| gduggal-snapplat | SNP | tv | map_l250_m1_e0 | * | 85.6503 | 79.4862 | 92.8508 | 94.0020 | 2104 | 543 | 2104 | 162 | 67 | 41.3580 | |
| gduggal-snapplat | SNP | tv | map_l250_m1_e0 | het | 85.2855 | 81.0856 | 89.9441 | 94.8591 | 1449 | 338 | 1449 | 162 | 67 | 41.3580 | |
| gduggal-snapplat | SNP | tv | map_l250_m1_e0 | hetalt | 85.7143 | 75.0000 | 100.0000 | 97.0000 | 3 | 1 | 3 | 0 | 0 | ||
| gduggal-snapplat | SNP | tv | map_l250_m1_e0 | homalt | 86.4721 | 76.1682 | 100.0000 | 89.7193 | 652 | 204 | 652 | 0 | 0 | ||
| gduggal-snapvard | INDEL | * | map_l250_m1_e0 | * | 77.4944 | 91.1475 | 67.3986 | 95.4162 | 278 | 27 | 399 | 193 | 44 | 22.7979 | |
| gduggal-snapvard | INDEL | * | map_l250_m1_e0 | het | 72.3286 | 94.2105 | 58.6957 | 95.8488 | 179 | 11 | 270 | 190 | 42 | 22.1053 | |
| gduggal-snapvard | INDEL | * | map_l250_m1_e0 | hetalt | 0.0000 | 50.0000 | 0.0000 | 0.0000 | 3 | 3 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | * | map_l250_m1_e0 | homalt | 92.6495 | 88.0734 | 97.7273 | 92.8026 | 96 | 13 | 129 | 3 | 2 | 66.6667 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l250_m1_e0 | * | 66.6667 | 75.0000 | 60.0000 | 99.5155 | 3 | 1 | 3 | 2 | 1 | 50.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l250_m1_e0 | het | 75.0000 | 100.0000 | 60.0000 | 99.2212 | 3 | 0 | 3 | 2 | 1 | 50.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l250_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | D16_PLUS | map_l250_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ghariani-varprowl | INDEL | D6_15 | map_l250_m1_e0 | * | 88.8889 | 88.8889 | 88.8889 | 97.3174 | 16 | 2 | 16 | 2 | 1 | 50.0000 | |
| ghariani-varprowl | INDEL | D6_15 | map_l250_m1_e0 | het | 91.6667 | 100.0000 | 84.6154 | 97.7966 | 11 | 0 | 11 | 2 | 1 | 50.0000 | |
| ghariani-varprowl | INDEL | D6_15 | map_l250_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 2 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | D6_15 | map_l250_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 93.8272 | 5 | 0 | 5 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I16_PLUS | map_l250_m1_e0 | * | 66.6667 | 100.0000 | 50.0000 | 95.2381 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_l250_m1_e0 | het | 66.6667 | 100.0000 | 50.0000 | 94.7368 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_l250_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | I16_PLUS | map_l250_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ghariani-varprowl | INDEL | D1_5 | map_l250_m1_e0 | * | 86.3271 | 94.1520 | 79.7030 | 96.1626 | 161 | 10 | 161 | 41 | 4 | 9.7561 | |
| ghariani-varprowl | INDEL | D1_5 | map_l250_m1_e0 | het | 83.9216 | 96.3964 | 74.3056 | 96.7814 | 107 | 4 | 107 | 37 | 3 | 8.1081 | |
| ghariani-varprowl | INDEL | D1_5 | map_l250_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 3 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | D1_5 | map_l250_m1_e0 | homalt | 93.9130 | 94.7368 | 93.1034 | 92.6582 | 54 | 3 | 54 | 4 | 1 | 25.0000 | |
| ghariani-varprowl | INDEL | I1_5 | map_l250_m1_e0 | * | 91.2442 | 93.3962 | 89.1892 | 97.0217 | 99 | 7 | 99 | 12 | 4 | 33.3333 | |
| ghariani-varprowl | INDEL | I1_5 | map_l250_m1_e0 | het | 90.7692 | 98.3333 | 84.2857 | 97.7827 | 59 | 1 | 59 | 11 | 3 | 27.2727 | |
| ghariani-varprowl | INDEL | I1_5 | map_l250_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 2 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | I1_5 | map_l250_m1_e0 | homalt | 94.1176 | 90.9091 | 97.5610 | 92.8070 | 40 | 4 | 40 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | INDEL | I6_15 | map_l250_m1_e0 | * | 46.1538 | 42.8571 | 50.0000 | 97.7358 | 3 | 4 | 3 | 3 | 2 | 66.6667 | |
| ghariani-varprowl | INDEL | I6_15 | map_l250_m1_e0 | het | 44.4444 | 50.0000 | 40.0000 | 97.8541 | 2 | 2 | 2 | 3 | 2 | 66.6667 | |
| ghariani-varprowl | INDEL | I6_15 | map_l250_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | I6_15 | map_l250_m1_e0 | homalt | 50.0000 | 33.3333 | 100.0000 | 96.8750 | 1 | 2 | 1 | 0 | 0 | ||
| ghariani-varprowl | SNP | * | map_l250_m1_e0 | * | 95.4295 | 97.2861 | 93.6425 | 90.9971 | 7026 | 196 | 7026 | 477 | 84 | 17.6101 | |
| ghariani-varprowl | SNP | * | map_l250_m1_e0 | het | 94.1868 | 97.7918 | 90.8381 | 91.9418 | 4650 | 105 | 4650 | 469 | 80 | 17.0576 | |
| ghariani-varprowl | SNP | * | map_l250_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 4 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | * | map_l250_m1_e0 | homalt | 98.0400 | 96.4677 | 99.6644 | 87.9687 | 2376 | 87 | 2376 | 8 | 4 | 50.0000 | |
| ghariani-varprowl | SNP | ti | map_l250_m1_e0 | * | 96.0095 | 97.2046 | 94.8434 | 90.8840 | 4451 | 128 | 4451 | 242 | 52 | 21.4876 | |
| ghariani-varprowl | SNP | ti | map_l250_m1_e0 | het | 94.9386 | 97.6415 | 92.3813 | 91.9764 | 2898 | 70 | 2898 | 239 | 49 | 20.5021 | |
| ghariani-varprowl | SNP | ti | map_l250_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 4 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | ti | map_l250_m1_e0 | homalt | 98.1979 | 96.6397 | 99.8072 | 87.4354 | 1553 | 54 | 1553 | 3 | 3 | 100.0000 | |
| ghariani-varprowl | SNP | tv | map_l250_m1_e0 | * | 94.3742 | 97.2799 | 91.6370 | 91.1799 | 2575 | 72 | 2575 | 235 | 32 | 13.6170 | |
| ghariani-varprowl | SNP | tv | map_l250_m1_e0 | het | 92.9690 | 98.0414 | 88.3956 | 91.8864 | 1752 | 35 | 1752 | 230 | 31 | 13.4783 | |
| ghariani-varprowl | SNP | tv | map_l250_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 4 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | tv | map_l250_m1_e0 | homalt | 97.7435 | 96.1449 | 99.3961 | 88.8575 | 823 | 33 | 823 | 5 | 1 | 20.0000 | |