PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
12001-12050 / 86044 show all | |||||||||||||||
| gduggal-snapvard | INDEL | I1_5 | map_l250_m1_e0 | * | 83.3611 | 92.4528 | 75.8974 | 95.7498 | 98 | 8 | 148 | 47 | 13 | 27.6596 | |
| gduggal-snapvard | INDEL | I1_5 | map_l250_m1_e0 | het | 79.7395 | 96.6667 | 67.8571 | 96.3721 | 58 | 2 | 95 | 45 | 12 | 26.6667 | |
| gduggal-snapvard | INDEL | I1_5 | map_l250_m1_e0 | hetalt | 0.0000 | 50.0000 | 0.0000 | 0.0000 | 1 | 1 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I1_5 | map_l250_m1_e0 | homalt | 92.3386 | 88.6364 | 96.3636 | 92.4554 | 39 | 5 | 53 | 2 | 1 | 50.0000 | |
| gduggal-snapvard | INDEL | I6_15 | map_l250_m1_e0 | * | 42.8571 | 42.8571 | 42.8571 | 93.8416 | 3 | 4 | 9 | 12 | 8 | 66.6667 | |
| gduggal-snapvard | INDEL | I6_15 | map_l250_m1_e0 | het | 54.5455 | 75.0000 | 42.8571 | 93.3544 | 3 | 1 | 9 | 12 | 8 | 66.6667 | |
| gduggal-snapvard | INDEL | I6_15 | map_l250_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | I6_15 | map_l250_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 3 | 0 | 0 | 0 | ||||
| gduggal-snapvard | SNP | ti | map_l250_m1_e0 | * | 86.1545 | 95.0207 | 78.8017 | 91.2590 | 4351 | 228 | 4327 | 1164 | 68 | 5.8419 | |
| gduggal-snapvard | SNP | ti | map_l250_m1_e0 | het | 81.6091 | 95.8895 | 71.0309 | 92.1854 | 2846 | 122 | 2832 | 1155 | 61 | 5.2814 | |
| gduggal-snapvard | SNP | ti | map_l250_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 4 | 0 | 0 | 0 | |||
| gduggal-snapvard | SNP | ti | map_l250_m1_e0 | homalt | 96.4416 | 93.6528 | 99.4016 | 87.2532 | 1505 | 102 | 1495 | 9 | 7 | 77.7778 | |
| gduggal-snapvard | SNP | tv | map_l250_m1_e0 | * | 84.2656 | 95.6932 | 75.2762 | 90.8080 | 2533 | 114 | 2521 | 828 | 30 | 3.6232 | |
| gduggal-snapvard | SNP | tv | map_l250_m1_e0 | het | 79.6442 | 96.8663 | 67.6217 | 91.5354 | 1731 | 56 | 1723 | 825 | 28 | 3.3939 | |
| gduggal-snapvard | SNP | tv | map_l250_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 4 | 0 | 0 | 0 | |||
| gduggal-snapvard | SNP | tv | map_l250_m1_e0 | homalt | 96.5675 | 93.6916 | 99.6255 | 87.3500 | 802 | 54 | 798 | 3 | 2 | 66.6667 | |
| ghariani-varprowl | INDEL | * | map_l250_m1_e0 | * | 87.2111 | 92.7869 | 82.2674 | 98.0750 | 283 | 22 | 283 | 61 | 12 | 19.6721 | |
| ghariani-varprowl | INDEL | * | map_l250_m1_e0 | het | 85.3147 | 96.3158 | 76.5690 | 97.3834 | 183 | 7 | 183 | 56 | 10 | 17.8571 | |
| ghariani-varprowl | INDEL | * | map_l250_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 6 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | * | map_l250_m1_e0 | homalt | 93.4579 | 91.7431 | 95.2381 | 94.3760 | 100 | 9 | 100 | 5 | 2 | 40.0000 | |
| gduggal-snapvard | SNP | * | map_l250_m1_e0 | * | 85.6069 | 95.3199 | 77.6904 | 91.0746 | 6884 | 338 | 6815 | 1957 | 96 | 4.9055 | |
| gduggal-snapvard | SNP | * | map_l250_m1_e0 | het | 81.0291 | 96.2566 | 69.9614 | 91.9347 | 4577 | 178 | 4530 | 1945 | 87 | 4.4730 | |
| gduggal-snapvard | SNP | * | map_l250_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 4 | 0 | 0 | 0 | |||
| gduggal-snapvard | SNP | * | map_l250_m1_e0 | homalt | 96.4845 | 93.6663 | 99.4776 | 87.2382 | 2307 | 156 | 2285 | 12 | 9 | 75.0000 | |
| ghariani-varprowl | INDEL | C16_PLUS | map_l250_m1_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | C16_PLUS | map_l250_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | C16_PLUS | map_l250_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | C16_PLUS | map_l250_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | C1_5 | map_l250_m1_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | C1_5 | map_l250_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | C1_5 | map_l250_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | C1_5 | map_l250_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | C6_15 | map_l250_m1_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | C6_15 | map_l250_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | C6_15 | map_l250_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | C6_15 | map_l250_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | I16_PLUS | map_l250_m1_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | I16_PLUS | map_l250_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | I16_PLUS | map_l250_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | I16_PLUS | map_l250_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | I6_15 | map_l250_m1_e0 | * | 0.0000 | 0.0000 | 99.2806 | 0 | 7 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-snapplat | INDEL | I6_15 | map_l250_m1_e0 | het | 0.0000 | 0.0000 | 98.7013 | 0 | 4 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-snapplat | INDEL | I6_15 | map_l250_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | INDEL | I6_15 | map_l250_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 3 | 0 | 0 | 0 | ||||
| gduggal-snapplat | SNP | * | map_l250_m1_e0 | * | 87.2444 | 81.6810 | 93.6211 | 93.6506 | 5899 | 1323 | 5900 | 402 | 193 | 48.0100 | |
| gduggal-snapplat | SNP | * | map_l250_m1_e0 | het | 87.0994 | 83.6172 | 90.8842 | 94.6651 | 3976 | 779 | 3978 | 399 | 190 | 47.6190 | |
| gduggal-snapplat | SNP | * | map_l250_m1_e0 | hetalt | 85.7143 | 75.0000 | 100.0000 | 97.0000 | 3 | 1 | 3 | 0 | 0 | ||
| gduggal-snapplat | SNP | * | map_l250_m1_e0 | homalt | 87.5513 | 77.9537 | 99.8439 | 88.7661 | 1920 | 543 | 1919 | 3 | 3 | 100.0000 | |
| gduggal-snapplat | INDEL | I1_5 | map_l250_m1_e0 | * | 77.9487 | 71.6981 | 85.3933 | 98.3386 | 76 | 30 | 76 | 13 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I1_5 | map_l250_m1_e0 | het | 72.5664 | 68.3333 | 77.3585 | 98.6126 | 41 | 19 | 41 | 12 | 0 | 0.0000 | |