PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
11951-12000 / 86044 show all | |||||||||||||||
| gduggal-snapplat | INDEL | C1_5 | map_l250_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | C1_5 | map_l250_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | INDEL | * | map_l250_m1_e0 | * | 76.0632 | 67.8689 | 86.5079 | 98.0285 | 207 | 98 | 218 | 34 | 5 | 14.7059 | |
| gduggal-snapplat | INDEL | * | map_l250_m1_e0 | het | 74.0557 | 68.4211 | 80.7018 | 98.2243 | 130 | 60 | 138 | 33 | 5 | 15.1515 | |
| gduggal-snapplat | INDEL | * | map_l250_m1_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 99.7899 | 2 | 4 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | * | map_l250_m1_e0 | homalt | 81.1033 | 68.8073 | 98.7500 | 97.0105 | 75 | 34 | 79 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | C6_15 | map_l250_m1_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | C6_15 | map_l250_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | C6_15 | map_l250_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | C6_15 | map_l250_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | D16_PLUS | map_l250_m1_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 4 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | D16_PLUS | map_l250_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 3 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | D16_PLUS | map_l250_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | D16_PLUS | map_l250_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | D1_5 | map_l250_m1_e0 | * | 80.7499 | 74.8538 | 87.6543 | 97.7406 | 128 | 43 | 142 | 20 | 5 | 25.0000 | |
| gduggal-snapplat | INDEL | D1_5 | map_l250_m1_e0 | het | 80.9816 | 79.2793 | 82.7586 | 97.8940 | 88 | 23 | 96 | 20 | 5 | 25.0000 | |
| gduggal-snapplat | INDEL | D1_5 | map_l250_m1_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 99.7183 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D1_5 | map_l250_m1_e0 | homalt | 81.2500 | 68.4211 | 100.0000 | 96.5570 | 39 | 18 | 45 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D6_15 | map_l250_m1_e0 | * | 36.3636 | 22.2222 | 100.0000 | 99.7183 | 4 | 14 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D6_15 | map_l250_m1_e0 | het | 16.6667 | 9.0909 | 100.0000 | 99.5495 | 1 | 10 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D6_15 | map_l250_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 2 | 0 | 0 | 0 | ||||
| gduggal-snapplat | INDEL | D6_15 | map_l250_m1_e0 | homalt | 60.0000 | 100.0000 | 3 | 2 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | C16_PLUS | map_l250_m1_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | C16_PLUS | map_l250_m1_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | C16_PLUS | map_l250_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | C16_PLUS | map_l250_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | C1_5 | map_l250_m1_e0 | * | 0.0000 | 0.0000 | 31.0345 | 97.5753 | 0 | 0 | 9 | 20 | 1 | 5.0000 | |
| gduggal-snapvard | INDEL | C1_5 | map_l250_m1_e0 | het | 0.0000 | 0.0000 | 20.0000 | 97.5938 | 0 | 0 | 5 | 20 | 1 | 5.0000 | |
| gduggal-snapvard | INDEL | C1_5 | map_l250_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | C1_5 | map_l250_m1_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 97.4522 | 0 | 0 | 4 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D16_PLUS | map_l250_m1_e0 | * | 33.3333 | 25.0000 | 50.0000 | 94.5946 | 1 | 3 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l250_m1_e0 | het | 40.0000 | 33.3333 | 50.0000 | 93.9394 | 1 | 2 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l250_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | D16_PLUS | map_l250_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | D1_5 | map_l250_m1_e0 | * | 79.8265 | 97.6608 | 67.5000 | 94.8077 | 167 | 4 | 216 | 104 | 17 | 16.3462 | |
| gduggal-snapvard | INDEL | D1_5 | map_l250_m1_e0 | het | 73.8070 | 99.0991 | 58.8000 | 95.2866 | 110 | 1 | 147 | 103 | 16 | 15.5340 | |
| gduggal-snapvard | INDEL | D1_5 | map_l250_m1_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 3 | 0 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | map_l250_m1_e0 | homalt | 96.6161 | 94.7368 | 98.5714 | 91.8510 | 54 | 3 | 69 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | C6_15 | map_l250_m1_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | C6_15 | map_l250_m1_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | C6_15 | map_l250_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | C6_15 | map_l250_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | D6_15 | map_l250_m1_e0 | * | 56.9106 | 55.5556 | 58.3333 | 95.4631 | 10 | 8 | 14 | 10 | 5 | 50.0000 | |
| gduggal-snapvard | INDEL | D6_15 | map_l250_m1_e0 | het | 57.4627 | 63.6364 | 52.3810 | 95.5975 | 7 | 4 | 11 | 10 | 5 | 50.0000 | |
| gduggal-snapvard | INDEL | D6_15 | map_l250_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 2 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | D6_15 | map_l250_m1_e0 | homalt | 75.0000 | 60.0000 | 100.0000 | 94.2308 | 3 | 2 | 3 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I16_PLUS | map_l250_m1_e0 | * | 0.0000 | 0.0000 | 100.0000 | 91.6667 | 0 | 1 | 3 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I16_PLUS | map_l250_m1_e0 | het | 0.0000 | 0.0000 | 100.0000 | 91.6667 | 0 | 1 | 3 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I16_PLUS | map_l250_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | I16_PLUS | map_l250_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||