PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
11901-11950 / 86044 show all | |||||||||||||||
| rpoplin-dv42 | SNP | tv | map_l250_m1_e0 | * | 97.8376 | 97.4311 | 98.2476 | 86.7964 | 2579 | 68 | 2579 | 46 | 30 | 65.2174 | |
| rpoplin-dv42 | SNP | tv | map_l250_m1_e0 | het | 97.6497 | 97.6497 | 97.6497 | 86.6731 | 1745 | 42 | 1745 | 42 | 26 | 61.9048 | |
| rpoplin-dv42 | SNP | tv | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.8333 | 4 | 0 | 4 | 0 | 0 | ||
| rpoplin-dv42 | SNP | tv | map_l250_m1_e0 | homalt | 98.2249 | 96.9626 | 99.5204 | 86.9197 | 830 | 26 | 830 | 4 | 4 | 100.0000 | |
| rpoplin-dv42 | SNP | ti | map_l250_m1_e0 | * | 98.4440 | 98.1000 | 98.7904 | 87.6879 | 4492 | 87 | 4492 | 55 | 36 | 65.4545 | |
| rpoplin-dv42 | SNP | ti | map_l250_m1_e0 | het | 98.2113 | 98.0458 | 98.3773 | 88.2203 | 2910 | 58 | 2910 | 48 | 29 | 60.4167 | |
| rpoplin-dv42 | SNP | ti | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.6508 | 4 | 0 | 4 | 0 | 0 | ||
| rpoplin-dv42 | SNP | ti | map_l250_m1_e0 | homalt | 98.8722 | 98.1954 | 99.5584 | 86.5187 | 1578 | 29 | 1578 | 7 | 7 | 100.0000 | |
| rpoplin-dv42 | SNP | * | map_l250_m1_e0 | * | 98.2210 | 97.8538 | 98.5910 | 87.3689 | 7067 | 155 | 7067 | 101 | 66 | 65.3465 | |
| rpoplin-dv42 | SNP | * | map_l250_m1_e0 | het | 98.0000 | 97.8970 | 98.1033 | 87.6817 | 4655 | 100 | 4655 | 90 | 55 | 61.1111 | |
| rpoplin-dv42 | SNP | * | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.8333 | 4 | 0 | 4 | 0 | 0 | ||
| rpoplin-dv42 | SNP | * | map_l250_m1_e0 | homalt | 98.6481 | 97.7670 | 99.5453 | 86.6597 | 2408 | 55 | 2408 | 11 | 11 | 100.0000 | |
| rpoplin-dv42 | INDEL | C6_15 | map_l250_m1_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | C6_15 | map_l250_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | INDEL | C6_15 | map_l250_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | C6_15 | map_l250_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | INDEL | D6_15 | map_l250_m1_e0 | * | 100.0000 | 100.0000 | 100.0000 | 96.6355 | 18 | 0 | 18 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D6_15 | map_l250_m1_e0 | het | 100.0000 | 100.0000 | 100.0000 | 96.6867 | 11 | 0 | 11 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D6_15 | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.3636 | 2 | 0 | 2 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D6_15 | map_l250_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.6216 | 5 | 0 | 5 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D1_5 | map_l250_m1_e0 | * | 97.9351 | 97.0760 | 98.8095 | 95.1431 | 166 | 5 | 166 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l250_m1_e0 | het | 97.2477 | 95.4955 | 99.0654 | 95.2018 | 106 | 5 | 106 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.5075 | 3 | 0 | 3 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D1_5 | map_l250_m1_e0 | homalt | 99.1304 | 100.0000 | 98.2759 | 94.3580 | 57 | 0 | 57 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | map_l250_m1_e0 | * | 50.0000 | 42.8571 | 60.0000 | 97.5124 | 3 | 4 | 3 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | map_l250_m1_e0 | het | 50.0000 | 50.0000 | 50.0000 | 96.3303 | 2 | 2 | 2 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | map_l250_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | I6_15 | map_l250_m1_e0 | homalt | 50.0000 | 33.3333 | 100.0000 | 98.5294 | 1 | 2 | 1 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | map_l250_m1_e0 | * | 100.0000 | 100.0000 | 100.0000 | 96.9697 | 4 | 0 | 4 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | map_l250_m1_e0 | het | 100.0000 | 100.0000 | 100.0000 | 96.0000 | 3 | 0 | 3 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.3077 | 1 | 0 | 1 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | map_l250_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | I16_PLUS | map_l250_m1_e0 | * | 66.6667 | 100.0000 | 50.0000 | 92.8571 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | map_l250_m1_e0 | het | 66.6667 | 100.0000 | 50.0000 | 88.2353 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | map_l250_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | I16_PLUS | map_l250_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | I1_5 | map_l250_m1_e0 | * | 95.2830 | 95.2830 | 95.2830 | 95.7275 | 101 | 5 | 101 | 5 | 2 | 40.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l250_m1_e0 | het | 94.9153 | 93.3333 | 96.5517 | 96.2215 | 56 | 4 | 56 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l250_m1_e0 | hetalt | 80.0000 | 100.0000 | 66.6667 | 98.1481 | 2 | 0 | 2 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l250_m1_e0 | homalt | 96.6292 | 97.7273 | 95.5556 | 94.2602 | 43 | 1 | 43 | 2 | 1 | 50.0000 | |
| gduggal-snapfb | SNP | tv | map_l250_m1_e0 | * | 94.8003 | 95.0510 | 94.5509 | 89.8505 | 2516 | 131 | 2516 | 145 | 53 | 36.5517 | |
| gduggal-snapfb | SNP | tv | map_l250_m1_e0 | het | 94.3085 | 95.9709 | 92.7027 | 86.6223 | 1715 | 72 | 1715 | 135 | 48 | 35.5556 | |
| gduggal-snapfb | SNP | tv | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.9697 | 4 | 0 | 4 | 0 | 0 | ||
| gduggal-snapfb | SNP | tv | map_l250_m1_e0 | homalt | 95.8509 | 93.1075 | 98.7608 | 93.4160 | 797 | 59 | 797 | 10 | 5 | 50.0000 | |
| gduggal-snapplat | INDEL | C16_PLUS | map_l250_m1_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | C16_PLUS | map_l250_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | C16_PLUS | map_l250_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | C16_PLUS | map_l250_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | C1_5 | map_l250_m1_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | INDEL | C1_5 | map_l250_m1_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||