PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
11451-11500 / 86044 show all | |||||||||||||||
| gduggal-snapfb | INDEL | C16_PLUS | map_l250_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | C16_PLUS | map_l250_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | C1_5 | map_l250_m1_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | C1_5 | map_l250_m1_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | C1_5 | map_l250_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | C1_5 | map_l250_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | C6_15 | map_l250_m1_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | C6_15 | map_l250_m1_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | C6_15 | map_l250_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | C6_15 | map_l250_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | D16_PLUS | map_l250_m1_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 4 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | D16_PLUS | map_l250_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 3 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | D16_PLUS | map_l250_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | D16_PLUS | map_l250_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | D6_15 | map_l250_m1_e0 | * | 62.0690 | 50.0000 | 81.8182 | 96.2199 | 9 | 9 | 9 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | map_l250_m1_e0 | het | 66.6667 | 54.5455 | 85.7143 | 94.4444 | 6 | 5 | 6 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | map_l250_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 2 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | D6_15 | map_l250_m1_e0 | homalt | 66.6667 | 60.0000 | 75.0000 | 97.4684 | 3 | 2 | 3 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | I16_PLUS | map_l250_m1_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I16_PLUS | map_l250_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I16_PLUS | map_l250_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I16_PLUS | map_l250_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I1_5 | map_l250_m1_e0 | * | 92.3810 | 91.5094 | 93.2692 | 96.3636 | 97 | 9 | 97 | 7 | 3 | 42.8571 | |
| gduggal-snapfb | INDEL | I1_5 | map_l250_m1_e0 | het | 89.6552 | 86.6667 | 92.8571 | 95.7831 | 52 | 8 | 52 | 4 | 1 | 25.0000 | |
| gduggal-snapfb | INDEL | I1_5 | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.1132 | 2 | 0 | 2 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I1_5 | map_l250_m1_e0 | homalt | 95.5556 | 97.7273 | 93.4783 | 96.7742 | 43 | 1 | 43 | 3 | 2 | 66.6667 | |
| gduggal-snapfb | INDEL | D1_5 | map_l250_m1_e0 | * | 95.1009 | 96.4912 | 93.7500 | 94.8882 | 165 | 6 | 165 | 11 | 1 | 9.0909 | |
| gduggal-snapfb | INDEL | D1_5 | map_l250_m1_e0 | het | 93.4498 | 96.3964 | 90.6780 | 93.2610 | 107 | 4 | 107 | 11 | 1 | 9.0909 | |
| gduggal-snapfb | INDEL | D1_5 | map_l250_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 97.5000 | 2 | 1 | 2 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D1_5 | map_l250_m1_e0 | homalt | 99.1150 | 98.2456 | 100.0000 | 96.5261 | 56 | 1 | 56 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | map_l250_m1_e0 | * | 83.3333 | 71.4286 | 100.0000 | 94.9495 | 5 | 2 | 5 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | map_l250_m1_e0 | het | 85.7143 | 75.0000 | 100.0000 | 94.4444 | 3 | 1 | 3 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | map_l250_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | I6_15 | map_l250_m1_e0 | homalt | 80.0000 | 66.6667 | 100.0000 | 94.8718 | 2 | 1 | 2 | 0 | 0 | ||
| gduggal-snapfb | SNP | * | map_l250_m1_e0 | * | 94.5000 | 94.2121 | 94.7896 | 89.4714 | 6804 | 418 | 6804 | 374 | 175 | 46.7914 | |
| gduggal-snapfb | SNP | * | map_l250_m1_e0 | het | 94.0213 | 95.4154 | 92.6675 | 86.7306 | 4537 | 218 | 4537 | 359 | 166 | 46.2396 | |
| gduggal-snapfb | SNP | * | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.9697 | 4 | 0 | 4 | 0 | 0 | ||
| gduggal-snapfb | SNP | * | map_l250_m1_e0 | homalt | 95.4651 | 91.8798 | 99.3415 | 92.6863 | 2263 | 200 | 2263 | 15 | 9 | 60.0000 | |
| gduggal-snapfb | SNP | ti | map_l250_m1_e0 | * | 94.3297 | 93.7323 | 94.9347 | 89.2465 | 4292 | 287 | 4292 | 229 | 122 | 53.2751 | |
| gduggal-snapfb | SNP | ti | map_l250_m1_e0 | het | 93.8477 | 95.0809 | 92.6461 | 86.7956 | 2822 | 146 | 2822 | 224 | 118 | 52.6786 | |
| gduggal-snapfb | SNP | ti | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.2381 | 4 | 0 | 4 | 0 | 0 | ||
| gduggal-snapfb | SNP | ti | map_l250_m1_e0 | homalt | 95.2567 | 91.2259 | 99.6601 | 92.2128 | 1466 | 141 | 1466 | 5 | 4 | 80.0000 | |
| hfeng-pmm2 | INDEL | C16_PLUS | map_l250_m1_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | C16_PLUS | map_l250_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | C16_PLUS | map_l250_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | C16_PLUS | map_l250_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | C6_15 | map_l250_m1_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | C6_15 | map_l250_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | C6_15 | map_l250_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | C6_15 | map_l250_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||