PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
11351-11400 / 86044 show all | |||||||||||||||
| gduggal-bwaplat | INDEL | I1_5 | map_l250_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 2 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | I1_5 | map_l250_m1_e0 | homalt | 40.0000 | 25.0000 | 100.0000 | 98.6453 | 11 | 33 | 11 | 0 | 0 | ||
| gduggal-bwaplat | SNP | ti | map_l250_m1_e0 | * | 54.0102 | 37.0605 | 99.5311 | 97.1343 | 1697 | 2882 | 1698 | 8 | 2 | 25.0000 | |
| gduggal-bwaplat | SNP | ti | map_l250_m1_e0 | het | 57.3348 | 40.2965 | 99.3367 | 97.5609 | 1196 | 1772 | 1198 | 8 | 2 | 25.0000 | |
| gduggal-bwaplat | SNP | ti | map_l250_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 4 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | SNP | ti | map_l250_m1_e0 | homalt | 47.5332 | 31.1761 | 100.0000 | 95.0135 | 501 | 1106 | 500 | 0 | 0 | ||
| gduggal-bwaplat | SNP | tv | map_l250_m1_e0 | * | 48.2541 | 31.8474 | 99.5277 | 97.7346 | 843 | 1804 | 843 | 4 | 1 | 25.0000 | |
| gduggal-bwaplat | SNP | tv | map_l250_m1_e0 | het | 52.1057 | 35.3106 | 99.3701 | 97.9946 | 631 | 1156 | 631 | 4 | 1 | 25.0000 | |
| gduggal-bwaplat | SNP | tv | map_l250_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 4 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | SNP | tv | map_l250_m1_e0 | homalt | 39.7004 | 24.7664 | 100.0000 | 96.2311 | 212 | 644 | 212 | 0 | 0 | ||
| gduggal-bwavard | INDEL | * | map_l250_m1_e0 | * | 82.3699 | 93.4426 | 73.6434 | 96.1257 | 285 | 20 | 285 | 102 | 15 | 14.7059 | |
| gduggal-bwavard | INDEL | * | map_l250_m1_e0 | het | 77.8894 | 96.8421 | 65.1408 | 96.6811 | 184 | 6 | 185 | 99 | 13 | 13.1313 | |
| gduggal-bwavard | INDEL | * | map_l250_m1_e0 | hetalt | 0.0000 | 16.6667 | 0.0000 | 0.0000 | 1 | 5 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | * | map_l250_m1_e0 | homalt | 94.3396 | 91.7431 | 97.0874 | 92.8073 | 100 | 9 | 100 | 3 | 2 | 66.6667 | |
| gduggal-bwavard | INDEL | C16_PLUS | map_l250_m1_e0 | * | 0.0000 | 0.0000 | 97.9167 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-bwavard | INDEL | C16_PLUS | map_l250_m1_e0 | het | 0.0000 | 0.0000 | 97.6744 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-bwavard | INDEL | C16_PLUS | map_l250_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | C16_PLUS | map_l250_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | D16_PLUS | map_l250_m1_e0 | * | 75.0000 | 75.0000 | 75.0000 | 95.3488 | 3 | 1 | 3 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l250_m1_e0 | het | 100.0000 | 100.0000 | 100.0000 | 92.6829 | 3 | 0 | 3 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D16_PLUS | map_l250_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| gduggal-bwafb | INDEL | D16_PLUS | map_l250_m1_e0 | homalt | 0.0000 | 0.0000 | 97.7778 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| gduggal-bwafb | INDEL | I16_PLUS | map_l250_m1_e0 | * | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | I16_PLUS | map_l250_m1_e0 | het | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | I16_PLUS | map_l250_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | I16_PLUS | map_l250_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | I1_5 | map_l250_m1_e0 | * | 94.6860 | 92.4528 | 97.0297 | 95.6893 | 98 | 8 | 98 | 3 | 1 | 33.3333 | |
| gduggal-bwafb | INDEL | I1_5 | map_l250_m1_e0 | het | 92.0354 | 86.6667 | 98.1132 | 96.1398 | 52 | 8 | 52 | 1 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | I1_5 | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.7273 | 2 | 0 | 2 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I1_5 | map_l250_m1_e0 | homalt | 97.7778 | 100.0000 | 95.6522 | 94.7846 | 44 | 0 | 44 | 2 | 1 | 50.0000 | |
| gduggal-bwafb | INDEL | D1_5 | map_l250_m1_e0 | * | 97.6471 | 97.0760 | 98.2249 | 95.1297 | 166 | 5 | 166 | 3 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D1_5 | map_l250_m1_e0 | het | 96.8326 | 96.3964 | 97.2727 | 94.8526 | 107 | 4 | 107 | 3 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D1_5 | map_l250_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 97.2973 | 2 | 1 | 2 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D1_5 | map_l250_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 95.4726 | 57 | 0 | 57 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D6_15 | map_l250_m1_e0 | * | 91.4286 | 88.8889 | 94.1176 | 96.2306 | 16 | 2 | 16 | 1 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l250_m1_e0 | het | 96.0000 | 100.0000 | 92.3077 | 94.6281 | 11 | 0 | 12 | 1 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l250_m1_e0 | hetalt | 50.0000 | 100.0000 | 1 | 1 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | D6_15 | map_l250_m1_e0 | homalt | 88.8889 | 80.0000 | 100.0000 | 97.9592 | 4 | 1 | 4 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I6_15 | map_l250_m1_e0 | * | 76.9231 | 71.4286 | 83.3333 | 95.6522 | 5 | 2 | 5 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | map_l250_m1_e0 | het | 66.6667 | 50.0000 | 100.0000 | 97.5000 | 2 | 2 | 2 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I6_15 | map_l250_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | I6_15 | map_l250_m1_e0 | homalt | 85.7143 | 100.0000 | 75.0000 | 92.1569 | 3 | 0 | 3 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | SNP | * | map_l250_m1_e0 | * | 97.6861 | 97.3276 | 98.0471 | 89.3479 | 7029 | 193 | 7029 | 140 | 38 | 27.1429 | |
| gduggal-bwafb | SNP | * | map_l250_m1_e0 | het | 97.0310 | 96.9085 | 97.1537 | 89.8249 | 4608 | 147 | 4608 | 135 | 33 | 24.4444 | |
| gduggal-bwafb | SNP | * | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.5484 | 4 | 0 | 4 | 0 | 0 | ||
| gduggal-bwafb | SNP | * | map_l250_m1_e0 | homalt | 98.9560 | 98.1324 | 99.7936 | 88.2570 | 2417 | 46 | 2417 | 5 | 5 | 100.0000 | |
| gduggal-bwafb | SNP | ti | map_l250_m1_e0 | * | 97.9068 | 97.5541 | 98.2622 | 89.4468 | 4467 | 112 | 4467 | 79 | 24 | 30.3797 | |
| gduggal-bwafb | SNP | ti | map_l250_m1_e0 | het | 97.3192 | 97.2372 | 97.4013 | 90.0480 | 2886 | 82 | 2886 | 77 | 22 | 28.5714 | |
| gduggal-bwafb | SNP | ti | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 89.1892 | 4 | 0 | 4 | 0 | 0 | ||
| gduggal-bwafb | SNP | ti | map_l250_m1_e0 | homalt | 98.9956 | 98.1332 | 99.8733 | 88.0983 | 1577 | 30 | 1577 | 2 | 2 | 100.0000 | |