PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
11001-11050 / 86044 show all | |||||||||||||||
| egarrison-hhga | SNP | ti | map_l250_m1_e0 | * | 98.7333 | 97.8816 | 99.6000 | 88.1610 | 4482 | 97 | 4482 | 18 | 8 | 44.4444 | |
| egarrison-hhga | SNP | ti | map_l250_m1_e0 | het | 98.3472 | 97.2372 | 99.4829 | 88.9494 | 2886 | 82 | 2886 | 15 | 5 | 33.3333 | |
| egarrison-hhga | SNP | ti | map_l250_m1_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 93.3333 | 2 | 2 | 2 | 0 | 0 | ||
| egarrison-hhga | SNP | ti | map_l250_m1_e0 | homalt | 99.5006 | 99.1910 | 99.8121 | 86.3830 | 1594 | 13 | 1594 | 3 | 3 | 100.0000 | |
| egarrison-hhga | INDEL | I1_5 | map_l250_m1_e0 | * | 94.8357 | 95.2830 | 94.3925 | 96.0149 | 101 | 5 | 101 | 6 | 1 | 16.6667 | |
| egarrison-hhga | INDEL | I1_5 | map_l250_m1_e0 | het | 94.1176 | 93.3333 | 94.9153 | 96.5698 | 56 | 4 | 56 | 3 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | I1_5 | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.3051 | 2 | 0 | 2 | 0 | 0 | ||
| egarrison-hhga | INDEL | I1_5 | map_l250_m1_e0 | homalt | 95.5556 | 97.7273 | 93.4783 | 94.5691 | 43 | 1 | 43 | 3 | 1 | 33.3333 | |
| egarrison-hhga | SNP | tv | map_l250_m1_e0 | * | 98.4351 | 97.4311 | 99.4601 | 86.8596 | 2579 | 68 | 2579 | 14 | 7 | 50.0000 | |
| egarrison-hhga | SNP | tv | map_l250_m1_e0 | het | 98.0159 | 96.7543 | 99.3107 | 87.0375 | 1729 | 58 | 1729 | 12 | 5 | 41.6667 | |
| egarrison-hhga | SNP | tv | map_l250_m1_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 95.9184 | 2 | 2 | 2 | 0 | 0 | ||
| egarrison-hhga | SNP | tv | map_l250_m1_e0 | homalt | 99.4138 | 99.0654 | 99.7647 | 86.4065 | 848 | 8 | 848 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | * | map_l250_m1_e0 | * | 96.2226 | 96.0656 | 96.3801 | 98.1181 | 293 | 12 | 426 | 16 | 10 | 62.5000 | |
| eyeh-varpipe | INDEL | * | map_l250_m1_e0 | het | 96.2782 | 96.3158 | 96.2406 | 94.6853 | 183 | 7 | 256 | 10 | 4 | 40.0000 | |
| eyeh-varpipe | INDEL | * | map_l250_m1_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 98.0198 | 3 | 3 | 6 | 0 | 0 | ||
| eyeh-varpipe | INDEL | * | map_l250_m1_e0 | homalt | 97.3105 | 98.1651 | 96.4706 | 95.2843 | 107 | 2 | 164 | 6 | 6 | 100.0000 | |
| eyeh-varpipe | INDEL | C16_PLUS | map_l250_m1_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | C16_PLUS | map_l250_m1_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | C16_PLUS | map_l250_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | C16_PLUS | map_l250_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | C1_5 | map_l250_m1_e0 | * | 0.0000 | 0.0000 | 100.0000 | 98.2318 | 0 | 0 | 9 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C1_5 | map_l250_m1_e0 | het | 0.0000 | 0.0000 | 100.0000 | 97.9239 | 0 | 0 | 6 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C1_5 | map_l250_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | C1_5 | map_l250_m1_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 98.1132 | 0 | 0 | 3 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D16_PLUS | map_l250_m1_e0 | * | 75.0000 | 75.0000 | 75.0000 | 95.3488 | 3 | 1 | 3 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l250_m1_e0 | het | 100.0000 | 100.0000 | 100.0000 | 93.3333 | 3 | 0 | 3 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D16_PLUS | map_l250_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | D16_PLUS | map_l250_m1_e0 | homalt | 0.0000 | 0.0000 | 97.2222 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| eyeh-varpipe | INDEL | D1_5 | map_l250_m1_e0 | * | 96.7770 | 97.6608 | 95.9091 | 94.9039 | 167 | 4 | 211 | 9 | 4 | 44.4444 | |
| eyeh-varpipe | INDEL | D1_5 | map_l250_m1_e0 | het | 96.8418 | 98.1982 | 95.5224 | 94.5946 | 109 | 2 | 128 | 6 | 1 | 16.6667 | |
| eyeh-varpipe | INDEL | D1_5 | map_l250_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 98.7179 | 2 | 1 | 2 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D1_5 | map_l250_m1_e0 | homalt | 97.3286 | 98.2456 | 96.4286 | 95.0059 | 56 | 1 | 81 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | C6_15 | map_l250_m1_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | C6_15 | map_l250_m1_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | C6_15 | map_l250_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | C6_15 | map_l250_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | D6_15 | map_l250_m1_e0 | * | 92.1466 | 88.8889 | 95.6522 | 95.5684 | 16 | 2 | 22 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_l250_m1_e0 | het | 100.0000 | 100.0000 | 100.0000 | 95.2000 | 11 | 0 | 12 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D6_15 | map_l250_m1_e0 | hetalt | 0.0000 | 0.0000 | 100.0000 | 95.5556 | 0 | 2 | 2 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D6_15 | map_l250_m1_e0 | homalt | 94.1176 | 100.0000 | 88.8889 | 95.9821 | 5 | 0 | 8 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l250_m1_e0 | * | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | I16_PLUS | map_l250_m1_e0 | het | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | I16_PLUS | map_l250_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| eyeh-varpipe | INDEL | I16_PLUS | map_l250_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | I1_5 | map_l250_m1_e0 | * | 97.1563 | 97.1698 | 97.1429 | 94.7130 | 103 | 3 | 170 | 5 | 4 | 80.0000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l250_m1_e0 | het | 96.4637 | 96.6667 | 96.2617 | 94.0884 | 58 | 2 | 103 | 4 | 3 | 75.0000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.0874 | 2 | 0 | 3 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I1_5 | map_l250_m1_e0 | homalt | 98.0930 | 97.7273 | 98.4615 | 95.3472 | 43 | 1 | 64 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | C6_15 | map_l250_m1_e0 | * | 0.0000 | 0.0000 | 97.5000 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| cchapple-custom | INDEL | C6_15 | map_l250_m1_e0 | het | 0.0000 | 0.0000 | 96.4286 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||