PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubset GenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
10851-10900 / 86044 show all
ckim-isaacSNPtimap_l250_m1_e0hetalt
66.6667
50.0000
100.0000
88.2353
22200
ckim-isaacSNPtimap_l250_m1_e0homalt
61.8884
44.8662
99.7234
82.9922
72188672122
100.0000
ckim-isaacSNPtvmap_l250_m1_e0*
60.0000
42.9543
99.4751
90.6960
11371510113761
16.6667
ckim-isaacSNPtvmap_l250_m1_e0het
63.1820
46.3346
99.2806
91.7792
82895982861
16.6667
ckim-isaacSNPtvmap_l250_m1_e0hetalt
66.6667
50.0000
100.0000
92.3077
22200
ckim-isaacSNPtvmap_l250_m1_e0homalt
52.7945
35.8645
100.0000
85.4226
30754930700
ckim-vqsrINDEL*map_l250_m1_e0*
93.0757
94.7541
91.4557
97.2688
28916289272
7.4074
ckim-vqsrINDEL*map_l250_m1_e0het
90.3553
93.6842
87.2549
97.7493
17812178261
3.8462
ckim-vqsrINDEL*map_l250_m1_e0hetalt
80.0000
66.6667
100.0000
98.1308
42400
ckim-vqsrINDEL*map_l250_m1_e0homalt
98.6175
98.1651
99.0741
95.2880
107210711
100.0000
ckim-vqsrINDELC16_PLUSmap_l250_m1_e0*
0.0000
0.0000
0.0000
00000
ckim-vqsrINDELC16_PLUSmap_l250_m1_e0het
0.0000
0.0000
0.0000
00000
ckim-vqsrINDELC16_PLUSmap_l250_m1_e0hetalt
0.0000
0.0000
0.0000
00000
ckim-vqsrINDELC16_PLUSmap_l250_m1_e0homalt
0.0000
0.0000
0.0000
00000
ckim-vqsrSNP*map_l250_m1_e0*
57.9563
41.1520
97.9565
97.0469
297242502972620
0.0000
ckim-vqsrSNP*map_l250_m1_e0het
68.0455
52.2397
97.5648
97.0733
248422712484620
0.0000
ckim-vqsrSNP*map_l250_m1_e0hetalt
0.0000
100.0000
04000
ckim-vqsrSNP*map_l250_m1_e0homalt
33.0735
19.8132
100.0000
96.8810
488197548800
ckim-vqsrSNPtvmap_l250_m1_e0*
57.0360
40.3476
97.2678
97.1909
106815791068300
0.0000
ckim-vqsrSNPtvmap_l250_m1_e0het
67.2754
51.5389
96.8454
97.1535
921866921300
0.0000
ckim-vqsrSNPtvmap_l250_m1_e0hetalt
0.0000
100.0000
04000
ckim-vqsrSNPtvmap_l250_m1_e0homalt
29.3121
17.1729
100.0000
97.3637
14770914700
dgrover-gatkINDEL*map_l250_m1_e0*
95.7377
95.7377
95.7377
96.2967
29213292133
23.0769
dgrover-gatkINDEL*map_l250_m1_e0het
95.2880
95.7895
94.7917
96.7022
1828182101
10.0000
dgrover-gatkINDEL*map_l250_m1_e0hetalt
100.0000
100.0000
100.0000
97.1154
60600
dgrover-gatkINDEL*map_l250_m1_e0homalt
96.2963
95.4128
97.1963
95.1496
104510432
66.6667
ckim-vqsrSNPtimap_l250_m1_e0*
58.4497
41.5811
98.3471
96.9616
190426751904320
0.0000
ckim-vqsrSNPtimap_l250_m1_e0het
68.5076
52.6617
97.9937
97.0232
156314051563320
0.0000
ckim-vqsrSNPtimap_l250_m1_e0hetalt
0.0000
100.0000
04000
ckim-vqsrSNPtimap_l250_m1_e0homalt
35.0103
21.2197
100.0000
96.6137
341126634100
dgrover-gatkINDELC16_PLUSmap_l250_m1_e0*
0.0000
0.0000
0.0000
00000
dgrover-gatkINDELC16_PLUSmap_l250_m1_e0het
0.0000
0.0000
0.0000
00000
dgrover-gatkINDELC16_PLUSmap_l250_m1_e0hetalt
0.0000
0.0000
0.0000
00000
dgrover-gatkINDELC16_PLUSmap_l250_m1_e0homalt
0.0000
0.0000
0.0000
00000
dgrover-gatkINDELC1_5map_l250_m1_e0*
0.0000
0.0000
0.0000
00000
dgrover-gatkINDELC1_5map_l250_m1_e0het
0.0000
0.0000
0.0000
00000
dgrover-gatkINDELC1_5map_l250_m1_e0hetalt
0.0000
0.0000
0.0000
00000
dgrover-gatkINDELC1_5map_l250_m1_e0homalt
0.0000
0.0000
0.0000
00000
dgrover-gatkINDELC6_15map_l250_m1_e0*
0.0000
0.0000
0.0000
00000
dgrover-gatkINDELC6_15map_l250_m1_e0het
0.0000
0.0000
0.0000
00000
dgrover-gatkINDELC6_15map_l250_m1_e0hetalt
0.0000
0.0000
0.0000
00000
dgrover-gatkINDELC6_15map_l250_m1_e0homalt
0.0000
0.0000
0.0000
00000
dgrover-gatkINDELD16_PLUSmap_l250_m1_e0*
66.6667
75.0000
60.0000
97.9079
31320
0.0000
dgrover-gatkINDELD16_PLUSmap_l250_m1_e0het
57.1429
66.6667
50.0000
97.7528
21220
0.0000
dgrover-gatkINDELD16_PLUSmap_l250_m1_e0hetalt
100.0000
100.0000
100.0000
93.7500
10100
dgrover-gatkINDELD16_PLUSmap_l250_m1_e0homalt
0.0000
100.0000
00000
dgrover-gatkINDELD1_5map_l250_m1_e0*
97.6744
98.2456
97.1098
95.8000
168316850
0.0000
dgrover-gatkINDELD1_5map_l250_m1_e0het
97.3451
99.0991
95.6522
96.1513
110111050
0.0000
dgrover-gatkINDELD1_5map_l250_m1_e0hetalt
100.0000
100.0000
100.0000
97.5610
30300
dgrover-gatkINDELD1_5map_l250_m1_e0homalt
98.2143
96.4912
100.0000
94.5437
5525500