PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
10851-10900 / 86044 show all | |||||||||||||||
| ckim-isaac | SNP | ti | map_l250_m1_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 88.2353 | 2 | 2 | 2 | 0 | 0 | ||
| ckim-isaac | SNP | ti | map_l250_m1_e0 | homalt | 61.8884 | 44.8662 | 99.7234 | 82.9922 | 721 | 886 | 721 | 2 | 2 | 100.0000 | |
| ckim-isaac | SNP | tv | map_l250_m1_e0 | * | 60.0000 | 42.9543 | 99.4751 | 90.6960 | 1137 | 1510 | 1137 | 6 | 1 | 16.6667 | |
| ckim-isaac | SNP | tv | map_l250_m1_e0 | het | 63.1820 | 46.3346 | 99.2806 | 91.7792 | 828 | 959 | 828 | 6 | 1 | 16.6667 | |
| ckim-isaac | SNP | tv | map_l250_m1_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 92.3077 | 2 | 2 | 2 | 0 | 0 | ||
| ckim-isaac | SNP | tv | map_l250_m1_e0 | homalt | 52.7945 | 35.8645 | 100.0000 | 85.4226 | 307 | 549 | 307 | 0 | 0 | ||
| ckim-vqsr | INDEL | * | map_l250_m1_e0 | * | 93.0757 | 94.7541 | 91.4557 | 97.2688 | 289 | 16 | 289 | 27 | 2 | 7.4074 | |
| ckim-vqsr | INDEL | * | map_l250_m1_e0 | het | 90.3553 | 93.6842 | 87.2549 | 97.7493 | 178 | 12 | 178 | 26 | 1 | 3.8462 | |
| ckim-vqsr | INDEL | * | map_l250_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 98.1308 | 4 | 2 | 4 | 0 | 0 | ||
| ckim-vqsr | INDEL | * | map_l250_m1_e0 | homalt | 98.6175 | 98.1651 | 99.0741 | 95.2880 | 107 | 2 | 107 | 1 | 1 | 100.0000 | |
| ckim-vqsr | INDEL | C16_PLUS | map_l250_m1_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | INDEL | C16_PLUS | map_l250_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | INDEL | C16_PLUS | map_l250_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | INDEL | C16_PLUS | map_l250_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | SNP | * | map_l250_m1_e0 | * | 57.9563 | 41.1520 | 97.9565 | 97.0469 | 2972 | 4250 | 2972 | 62 | 0 | 0.0000 | |
| ckim-vqsr | SNP | * | map_l250_m1_e0 | het | 68.0455 | 52.2397 | 97.5648 | 97.0733 | 2484 | 2271 | 2484 | 62 | 0 | 0.0000 | |
| ckim-vqsr | SNP | * | map_l250_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 4 | 0 | 0 | 0 | ||||
| ckim-vqsr | SNP | * | map_l250_m1_e0 | homalt | 33.0735 | 19.8132 | 100.0000 | 96.8810 | 488 | 1975 | 488 | 0 | 0 | ||
| ckim-vqsr | SNP | tv | map_l250_m1_e0 | * | 57.0360 | 40.3476 | 97.2678 | 97.1909 | 1068 | 1579 | 1068 | 30 | 0 | 0.0000 | |
| ckim-vqsr | SNP | tv | map_l250_m1_e0 | het | 67.2754 | 51.5389 | 96.8454 | 97.1535 | 921 | 866 | 921 | 30 | 0 | 0.0000 | |
| ckim-vqsr | SNP | tv | map_l250_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 4 | 0 | 0 | 0 | ||||
| ckim-vqsr | SNP | tv | map_l250_m1_e0 | homalt | 29.3121 | 17.1729 | 100.0000 | 97.3637 | 147 | 709 | 147 | 0 | 0 | ||
| dgrover-gatk | INDEL | * | map_l250_m1_e0 | * | 95.7377 | 95.7377 | 95.7377 | 96.2967 | 292 | 13 | 292 | 13 | 3 | 23.0769 | |
| dgrover-gatk | INDEL | * | map_l250_m1_e0 | het | 95.2880 | 95.7895 | 94.7917 | 96.7022 | 182 | 8 | 182 | 10 | 1 | 10.0000 | |
| dgrover-gatk | INDEL | * | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.1154 | 6 | 0 | 6 | 0 | 0 | ||
| dgrover-gatk | INDEL | * | map_l250_m1_e0 | homalt | 96.2963 | 95.4128 | 97.1963 | 95.1496 | 104 | 5 | 104 | 3 | 2 | 66.6667 | |
| ckim-vqsr | SNP | ti | map_l250_m1_e0 | * | 58.4497 | 41.5811 | 98.3471 | 96.9616 | 1904 | 2675 | 1904 | 32 | 0 | 0.0000 | |
| ckim-vqsr | SNP | ti | map_l250_m1_e0 | het | 68.5076 | 52.6617 | 97.9937 | 97.0232 | 1563 | 1405 | 1563 | 32 | 0 | 0.0000 | |
| ckim-vqsr | SNP | ti | map_l250_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 4 | 0 | 0 | 0 | ||||
| ckim-vqsr | SNP | ti | map_l250_m1_e0 | homalt | 35.0103 | 21.2197 | 100.0000 | 96.6137 | 341 | 1266 | 341 | 0 | 0 | ||
| dgrover-gatk | INDEL | C16_PLUS | map_l250_m1_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| dgrover-gatk | INDEL | C16_PLUS | map_l250_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| dgrover-gatk | INDEL | C16_PLUS | map_l250_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| dgrover-gatk | INDEL | C16_PLUS | map_l250_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| dgrover-gatk | INDEL | C1_5 | map_l250_m1_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| dgrover-gatk | INDEL | C1_5 | map_l250_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| dgrover-gatk | INDEL | C1_5 | map_l250_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| dgrover-gatk | INDEL | C1_5 | map_l250_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| dgrover-gatk | INDEL | C6_15 | map_l250_m1_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| dgrover-gatk | INDEL | C6_15 | map_l250_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| dgrover-gatk | INDEL | C6_15 | map_l250_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| dgrover-gatk | INDEL | C6_15 | map_l250_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| dgrover-gatk | INDEL | D16_PLUS | map_l250_m1_e0 | * | 66.6667 | 75.0000 | 60.0000 | 97.9079 | 3 | 1 | 3 | 2 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | map_l250_m1_e0 | het | 57.1429 | 66.6667 | 50.0000 | 97.7528 | 2 | 1 | 2 | 2 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.7500 | 1 | 0 | 1 | 0 | 0 | ||
| dgrover-gatk | INDEL | D16_PLUS | map_l250_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| dgrover-gatk | INDEL | D1_5 | map_l250_m1_e0 | * | 97.6744 | 98.2456 | 97.1098 | 95.8000 | 168 | 3 | 168 | 5 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D1_5 | map_l250_m1_e0 | het | 97.3451 | 99.0991 | 95.6522 | 96.1513 | 110 | 1 | 110 | 5 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D1_5 | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.5610 | 3 | 0 | 3 | 0 | 0 | ||
| dgrover-gatk | INDEL | D1_5 | map_l250_m1_e0 | homalt | 98.2143 | 96.4912 | 100.0000 | 94.5437 | 55 | 2 | 55 | 0 | 0 | ||