PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
10801-10850 / 86044 show all | |||||||||||||||
| mlin-fermikit | INDEL | * | map_l250_m1_e0 | * | 52.1158 | 38.3607 | 81.2500 | 92.0966 | 117 | 188 | 117 | 27 | 20 | 74.0741 | |
| mlin-fermikit | INDEL | * | map_l250_m1_e0 | het | 46.6926 | 31.5789 | 89.5522 | 92.7095 | 60 | 130 | 60 | 7 | 1 | 14.2857 | |
| mlin-fermikit | INDEL | * | map_l250_m1_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 94.2308 | 3 | 3 | 3 | 0 | 0 | ||
| mlin-fermikit | INDEL | * | map_l250_m1_e0 | homalt | 59.0164 | 49.5413 | 72.9730 | 91.3043 | 54 | 55 | 54 | 20 | 19 | 95.0000 | |
| mlin-fermikit | INDEL | C6_15 | map_l250_m1_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | C6_15 | map_l250_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | C6_15 | map_l250_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | C6_15 | map_l250_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | D16_PLUS | map_l250_m1_e0 | * | 50.0000 | 50.0000 | 50.0000 | 95.7895 | 2 | 2 | 2 | 2 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l250_m1_e0 | het | 33.3333 | 33.3333 | 33.3333 | 94.0000 | 1 | 2 | 1 | 2 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 75.0000 | 1 | 0 | 1 | 0 | 0 | ||
| mlin-fermikit | INDEL | D16_PLUS | map_l250_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | INDEL | C16_PLUS | map_l250_m1_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | C16_PLUS | map_l250_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | C16_PLUS | map_l250_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | C16_PLUS | map_l250_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | C1_5 | map_l250_m1_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | C1_5 | map_l250_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | C1_5 | map_l250_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | C1_5 | map_l250_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | D1_5 | map_l250_m1_e0 | * | 54.4256 | 40.9357 | 81.1765 | 90.6181 | 70 | 101 | 69 | 16 | 14 | 87.5000 | |
| mlin-fermikit | INDEL | D1_5 | map_l250_m1_e0 | het | 46.2394 | 30.6306 | 94.2857 | 92.2566 | 34 | 77 | 33 | 2 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D1_5 | map_l250_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 92.8571 | 2 | 1 | 2 | 0 | 0 | ||
| mlin-fermikit | INDEL | D1_5 | map_l250_m1_e0 | homalt | 64.7619 | 59.6491 | 70.8333 | 88.7324 | 34 | 23 | 34 | 14 | 14 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l250_m1_e0 | * | 50.6787 | 38.8889 | 72.7273 | 93.4524 | 7 | 11 | 8 | 3 | 2 | 66.6667 | |
| mlin-fermikit | INDEL | D6_15 | map_l250_m1_e0 | het | 48.1928 | 36.3636 | 71.4286 | 91.4634 | 4 | 7 | 5 | 2 | 1 | 50.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l250_m1_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 87.5000 | 1 | 1 | 1 | 0 | 0 | ||
| mlin-fermikit | INDEL | D6_15 | map_l250_m1_e0 | homalt | 50.0000 | 40.0000 | 66.6667 | 96.1538 | 2 | 3 | 2 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l250_m1_e0 | * | 66.6667 | 100.0000 | 50.0000 | 90.4762 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l250_m1_e0 | het | 100.0000 | 100.0000 | 100.0000 | 94.1176 | 1 | 0 | 1 | 0 | 0 | ||
| mlin-fermikit | INDEL | I16_PLUS | map_l250_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | I16_PLUS | map_l250_m1_e0 | homalt | 0.0000 | 0.0000 | 75.0000 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| ckim-isaac | INDEL | I16_PLUS | map_l250_m1_e0 | * | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| ckim-isaac | INDEL | I16_PLUS | map_l250_m1_e0 | het | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| ckim-isaac | INDEL | I16_PLUS | map_l250_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-isaac | INDEL | I16_PLUS | map_l250_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-isaac | INDEL | I6_15 | map_l250_m1_e0 | * | 25.0000 | 14.2857 | 100.0000 | 99.4220 | 1 | 6 | 1 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | map_l250_m1_e0 | het | 0.0000 | 100.0000 | 0 | 4 | 0 | 0 | 0 | ||||
| ckim-isaac | INDEL | I6_15 | map_l250_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-isaac | INDEL | I6_15 | map_l250_m1_e0 | homalt | 50.0000 | 33.3333 | 100.0000 | 95.4545 | 1 | 2 | 1 | 0 | 0 | ||
| ckim-isaac | SNP | * | map_l250_m1_e0 | * | 64.1591 | 47.3553 | 99.4475 | 90.4206 | 3420 | 3802 | 3420 | 19 | 3 | 15.7895 | |
| ckim-isaac | SNP | * | map_l250_m1_e0 | het | 66.7411 | 50.2629 | 99.2937 | 91.8401 | 2390 | 2365 | 2390 | 17 | 1 | 5.8824 | |
| ckim-isaac | SNP | * | map_l250_m1_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 92.3077 | 2 | 2 | 2 | 0 | 0 | ||
| ckim-isaac | SNP | * | map_l250_m1_e0 | homalt | 58.8606 | 41.7377 | 99.8058 | 83.7974 | 1028 | 1435 | 1028 | 2 | 2 | 100.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l250_m1_e0 | * | 73.0539 | 57.5472 | 100.0000 | 96.9176 | 61 | 45 | 61 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | map_l250_m1_e0 | het | 78.7879 | 65.0000 | 100.0000 | 97.5549 | 39 | 21 | 39 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | map_l250_m1_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 98.7952 | 1 | 1 | 1 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | map_l250_m1_e0 | homalt | 64.6154 | 47.7273 | 100.0000 | 93.0233 | 21 | 23 | 21 | 0 | 0 | ||
| ckim-isaac | SNP | ti | map_l250_m1_e0 | * | 66.4534 | 49.9017 | 99.4343 | 90.2759 | 2285 | 2294 | 2285 | 13 | 2 | 15.3846 | |
| ckim-isaac | SNP | ti | map_l250_m1_e0 | het | 68.7954 | 52.6280 | 99.3007 | 91.8721 | 1562 | 1406 | 1562 | 11 | 0 | 0.0000 | |