PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
10751-10800 / 86044 show all | |||||||||||||||
| ltrigg-rtg2 | INDEL | C16_PLUS | map_l250_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C16_PLUS | map_l250_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | SNP | ti | map_l250_m1_e0 | * | 97.6589 | 95.6541 | 99.7497 | 82.8747 | 4380 | 199 | 4383 | 11 | 6 | 54.5455 | |
| ltrigg-rtg1 | SNP | ti | map_l250_m1_e0 | het | 96.5578 | 93.5647 | 99.7488 | 79.9395 | 2777 | 191 | 2780 | 7 | 2 | 28.5714 | |
| ltrigg-rtg1 | SNP | ti | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 77.7778 | 4 | 0 | 4 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | ti | map_l250_m1_e0 | homalt | 99.6262 | 99.5022 | 99.7505 | 86.3540 | 1599 | 8 | 1599 | 4 | 4 | 100.0000 | |
| ltrigg-rtg2 | INDEL | C1_5 | map_l250_m1_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C1_5 | map_l250_m1_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C1_5 | map_l250_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C1_5 | map_l250_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C6_15 | map_l250_m1_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C6_15 | map_l250_m1_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C6_15 | map_l250_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C6_15 | map_l250_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l250_m1_e0 | * | 85.7143 | 75.0000 | 100.0000 | 95.7746 | 3 | 1 | 3 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l250_m1_e0 | het | 80.0000 | 66.6667 | 100.0000 | 95.5556 | 2 | 1 | 2 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.0000 | 1 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l250_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | D1_5 | map_l250_m1_e0 | * | 96.6767 | 93.5673 | 100.0000 | 90.7736 | 160 | 11 | 161 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D1_5 | map_l250_m1_e0 | het | 96.2617 | 92.7928 | 100.0000 | 89.5210 | 103 | 8 | 105 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D1_5 | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.8636 | 3 | 0 | 2 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D1_5 | map_l250_m1_e0 | homalt | 97.2973 | 94.7368 | 100.0000 | 90.4762 | 54 | 3 | 54 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I16_PLUS | map_l250_m1_e0 | * | 66.6667 | 100.0000 | 50.0000 | 92.5926 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | map_l250_m1_e0 | het | 66.6667 | 100.0000 | 50.0000 | 84.6154 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | map_l250_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | I16_PLUS | map_l250_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | I1_5 | map_l250_m1_e0 | * | 95.1550 | 92.4528 | 98.0198 | 92.8923 | 98 | 8 | 99 | 2 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l250_m1_e0 | het | 92.2036 | 88.3333 | 96.4286 | 92.1897 | 53 | 7 | 54 | 2 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.9011 | 2 | 0 | 2 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I1_5 | map_l250_m1_e0 | homalt | 98.8506 | 97.7273 | 100.0000 | 91.7625 | 43 | 1 | 43 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | map_l250_m1_e0 | * | 83.3333 | 71.4286 | 100.0000 | 95.9016 | 5 | 2 | 5 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | map_l250_m1_e0 | het | 66.6667 | 50.0000 | 100.0000 | 96.5517 | 2 | 2 | 2 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | map_l250_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | I6_15 | map_l250_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 88.4615 | 3 | 0 | 3 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D6_15 | map_l250_m1_e0 | * | 100.0000 | 100.0000 | 100.0000 | 94.1558 | 18 | 0 | 18 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D6_15 | map_l250_m1_e0 | het | 100.0000 | 100.0000 | 100.0000 | 94.1176 | 11 | 0 | 11 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D6_15 | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.5517 | 2 | 0 | 2 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D6_15 | map_l250_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 92.0635 | 5 | 0 | 5 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | * | map_l250_m1_e0 | * | 96.9723 | 94.2398 | 99.8679 | 79.0649 | 6806 | 416 | 6806 | 9 | 4 | 44.4444 | |
| ltrigg-rtg2 | SNP | * | map_l250_m1_e0 | het | 95.5463 | 91.5878 | 99.8624 | 74.1983 | 4355 | 400 | 4355 | 6 | 1 | 16.6667 | |
| ltrigg-rtg2 | SNP | * | map_l250_m1_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 88.8889 | 2 | 2 | 2 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | * | map_l250_m1_e0 | homalt | 99.6541 | 99.4316 | 99.8777 | 84.3152 | 2449 | 14 | 2449 | 3 | 3 | 100.0000 | |
| ltrigg-rtg2 | SNP | ti | map_l250_m1_e0 | * | 97.1749 | 94.6495 | 99.8389 | 79.6190 | 4334 | 245 | 4337 | 7 | 4 | 57.1429 | |
| ltrigg-rtg2 | SNP | ti | map_l250_m1_e0 | het | 95.8290 | 92.1159 | 99.8541 | 75.2192 | 2734 | 234 | 2737 | 4 | 1 | 25.0000 | |
| ltrigg-rtg2 | SNP | ti | map_l250_m1_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 81.8182 | 2 | 2 | 2 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | ti | map_l250_m1_e0 | homalt | 99.6259 | 99.4400 | 99.8126 | 84.3683 | 1598 | 9 | 1598 | 3 | 3 | 100.0000 | |
| ltrigg-rtg2 | SNP | tv | map_l250_m1_e0 | * | 96.5840 | 93.4643 | 99.9191 | 77.8524 | 2474 | 173 | 2471 | 2 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | tv | map_l250_m1_e0 | het | 95.0732 | 90.7107 | 99.8765 | 72.2650 | 1621 | 166 | 1618 | 2 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | tv | map_l250_m1_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 88.8889 | 2 | 2 | 2 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | tv | map_l250_m1_e0 | homalt | 99.7071 | 99.4159 | 100.0000 | 83.9646 | 851 | 5 | 851 | 0 | 0 | ||