PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
10501-10550 / 86044 show all | |||||||||||||||
| ltrigg-rtg2 | SNP | tv | map_l250_m2_e0 | * | 96.7626 | 93.8584 | 99.8522 | 79.6388 | 2705 | 177 | 2702 | 4 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | tv | map_l250_m2_e0 | het | 95.3430 | 91.2887 | 99.7743 | 74.4189 | 1771 | 169 | 1768 | 4 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | tv | map_l250_m2_e0 | hetalt | 75.0000 | 60.0000 | 100.0000 | 86.9565 | 3 | 2 | 3 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | tv | map_l250_m2_e0 | homalt | 99.6788 | 99.3597 | 100.0000 | 85.3155 | 931 | 6 | 931 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | * | map_l250_m2_e0 | * | 97.1607 | 94.6100 | 99.8528 | 80.6416 | 7460 | 425 | 7460 | 11 | 4 | 36.3636 | |
| ltrigg-rtg2 | SNP | * | map_l250_m2_e0 | het | 95.8350 | 92.1448 | 99.8331 | 76.0408 | 4786 | 408 | 4786 | 8 | 1 | 12.5000 | |
| ltrigg-rtg2 | SNP | * | map_l250_m2_e0 | hetalt | 75.0000 | 60.0000 | 100.0000 | 86.9565 | 3 | 2 | 3 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | * | map_l250_m2_e0 | homalt | 99.6642 | 99.4415 | 99.8878 | 85.5934 | 2671 | 15 | 2671 | 3 | 3 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l250_m2_e0 | * | 96.9188 | 94.0217 | 100.0000 | 91.5122 | 173 | 11 | 174 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D1_5 | map_l250_m2_e0 | het | 96.5812 | 93.3884 | 100.0000 | 90.2625 | 113 | 8 | 115 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D1_5 | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.0000 | 3 | 0 | 2 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D1_5 | map_l250_m2_e0 | homalt | 97.4359 | 95.0000 | 100.0000 | 91.4798 | 57 | 3 | 57 | 0 | 0 | ||
| mlin-fermikit | INDEL | D16_PLUS | map_l250_m2_e0 | * | 54.5455 | 60.0000 | 50.0000 | 95.0820 | 3 | 2 | 3 | 3 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l250_m2_e0 | het | 28.5714 | 33.3333 | 25.0000 | 94.0299 | 1 | 2 | 1 | 3 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 75.0000 | 1 | 0 | 1 | 0 | 0 | ||
| mlin-fermikit | INDEL | D16_PLUS | map_l250_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 98.0392 | 1 | 0 | 1 | 0 | 0 | ||
| mlin-fermikit | INDEL | C16_PLUS | map_l250_m2_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | C16_PLUS | map_l250_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | C16_PLUS | map_l250_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | C16_PLUS | map_l250_m2_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | C1_5 | map_l250_m2_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | C1_5 | map_l250_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | C1_5 | map_l250_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | C1_5 | map_l250_m2_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | C6_15 | map_l250_m2_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | C6_15 | map_l250_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | C6_15 | map_l250_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | C6_15 | map_l250_m2_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | D6_15 | map_l250_m2_e0 | * | 43.0769 | 31.8182 | 66.6667 | 94.2308 | 7 | 15 | 8 | 4 | 3 | 75.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l250_m2_e0 | het | 40.8163 | 28.5714 | 71.4286 | 92.9293 | 4 | 10 | 5 | 2 | 1 | 50.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l250_m2_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 93.3333 | 1 | 1 | 1 | 0 | 0 | ||
| mlin-fermikit | INDEL | D6_15 | map_l250_m2_e0 | homalt | 40.0000 | 33.3333 | 50.0000 | 95.7447 | 2 | 4 | 2 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l250_m2_e0 | * | 66.6667 | 100.0000 | 50.0000 | 92.3077 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l250_m2_e0 | het | 100.0000 | 100.0000 | 100.0000 | 94.4444 | 1 | 0 | 1 | 0 | 0 | ||
| mlin-fermikit | INDEL | I16_PLUS | map_l250_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | I16_PLUS | map_l250_m2_e0 | homalt | 0.0000 | 0.0000 | 87.5000 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| mlin-fermikit | INDEL | D1_5 | map_l250_m2_e0 | * | 56.5892 | 42.9348 | 82.9787 | 91.5996 | 79 | 105 | 78 | 16 | 14 | 87.5000 | |
| mlin-fermikit | INDEL | D1_5 | map_l250_m2_e0 | het | 49.0643 | 33.0579 | 95.1220 | 92.7690 | 40 | 81 | 39 | 2 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D1_5 | map_l250_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 95.0000 | 2 | 1 | 2 | 0 | 0 | ||
| mlin-fermikit | INDEL | D1_5 | map_l250_m2_e0 | homalt | 66.6667 | 61.6667 | 72.5490 | 90.0391 | 37 | 23 | 37 | 14 | 14 | 100.0000 | |
| mlin-fermikit | INDEL | * | map_l250_m2_e0 | * | 53.6585 | 39.8792 | 81.9876 | 92.9540 | 132 | 199 | 132 | 29 | 21 | 72.4138 | |
| mlin-fermikit | INDEL | * | map_l250_m2_e0 | het | 48.6111 | 33.3333 | 89.7436 | 93.3504 | 70 | 140 | 70 | 8 | 1 | 12.5000 | |
| mlin-fermikit | INDEL | * | map_l250_m2_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 96.0000 | 3 | 3 | 3 | 0 | 0 | ||
| mlin-fermikit | INDEL | * | map_l250_m2_e0 | homalt | 60.5128 | 51.3043 | 73.7500 | 92.2854 | 59 | 56 | 59 | 21 | 20 | 95.2381 | |
| ltrigg-rtg2 | INDEL | * | map_l250_m2_e0 | * | 96.1163 | 93.3535 | 99.0476 | 93.0417 | 309 | 22 | 312 | 3 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | * | map_l250_m2_e0 | het | 94.8292 | 91.4286 | 98.4925 | 92.1437 | 192 | 18 | 196 | 3 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | * | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.7685 | 6 | 0 | 5 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | * | map_l250_m2_e0 | homalt | 98.2301 | 96.5217 | 100.0000 | 92.6733 | 111 | 4 | 111 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C16_PLUS | map_l250_m2_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C16_PLUS | map_l250_m2_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||