PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
10351-10400 / 86044 show all | |||||||||||||||
| raldana-dualsentieon | INDEL | * | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.7391 | 6 | 0 | 6 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | * | map_l250_m2_e0 | homalt | 96.8889 | 94.7826 | 99.0909 | 94.5893 | 109 | 6 | 109 | 1 | 1 | 100.0000 | |
| mlin-fermikit | SNP | tv | map_l250_m2_e0 | * | 45.2311 | 31.9223 | 77.5717 | 80.1107 | 920 | 1962 | 920 | 266 | 237 | 89.0977 | |
| mlin-fermikit | SNP | tv | map_l250_m2_e0 | het | 41.9263 | 26.7010 | 97.5518 | 84.3317 | 518 | 1422 | 518 | 13 | 0 | 0.0000 | |
| mlin-fermikit | SNP | tv | map_l250_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 5 | 0 | 0 | 0 | ||||
| mlin-fermikit | SNP | tv | map_l250_m2_e0 | homalt | 50.5025 | 42.9029 | 61.3740 | 74.4739 | 402 | 535 | 402 | 253 | 237 | 93.6759 | |
| mlin-fermikit | INDEL | I6_15 | map_l250_m2_e0 | * | 50.0000 | 37.5000 | 75.0000 | 95.5556 | 3 | 5 | 3 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | map_l250_m2_e0 | het | 57.1429 | 40.0000 | 100.0000 | 95.3488 | 2 | 3 | 2 | 0 | 0 | ||
| mlin-fermikit | INDEL | I6_15 | map_l250_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | INDEL | I6_15 | map_l250_m2_e0 | homalt | 40.0000 | 33.3333 | 50.0000 | 94.8718 | 1 | 2 | 1 | 1 | 1 | 100.0000 | |
| mlin-fermikit | SNP | * | map_l250_m2_e0 | * | 47.3085 | 33.2150 | 82.1776 | 79.9585 | 2619 | 5266 | 2619 | 568 | 495 | 87.1479 | |
| mlin-fermikit | SNP | * | map_l250_m2_e0 | het | 43.6369 | 28.0901 | 97.7227 | 83.2153 | 1459 | 3735 | 1459 | 34 | 1 | 2.9412 | |
| mlin-fermikit | SNP | * | map_l250_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 5 | 0 | 0 | 0 | ||||
| mlin-fermikit | SNP | * | map_l250_m2_e0 | homalt | 52.9680 | 43.1869 | 68.4770 | 75.7965 | 1160 | 1526 | 1160 | 534 | 494 | 92.5094 | |
| mlin-fermikit | SNP | ti | map_l250_m2_e0 | * | 48.4805 | 33.9257 | 84.9075 | 79.7858 | 1699 | 3309 | 1699 | 302 | 258 | 85.4305 | |
| mlin-fermikit | SNP | ti | map_l250_m2_e0 | het | 44.6395 | 28.9183 | 97.8170 | 82.5282 | 941 | 2313 | 941 | 21 | 1 | 4.7619 | |
| mlin-fermikit | SNP | ti | map_l250_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 5 | 0 | 0 | 0 | ||||
| mlin-fermikit | SNP | ti | map_l250_m2_e0 | homalt | 54.3759 | 43.3391 | 72.9548 | 76.3218 | 758 | 991 | 758 | 281 | 257 | 91.4591 | |
| ndellapenna-hhga | INDEL | C16_PLUS | map_l250_m2_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ndellapenna-hhga | INDEL | C16_PLUS | map_l250_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ndellapenna-hhga | INDEL | C16_PLUS | map_l250_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ndellapenna-hhga | INDEL | C16_PLUS | map_l250_m2_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ndellapenna-hhga | INDEL | C1_5 | map_l250_m2_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | C1_5 | map_l250_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ndellapenna-hhga | INDEL | C1_5 | map_l250_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ndellapenna-hhga | INDEL | C1_5 | map_l250_m2_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | * | map_l250_m2_e0 | * | 96.3636 | 96.0725 | 96.6565 | 99.5517 | 318 | 13 | 318 | 11 | 3 | 27.2727 | |
| ndellapenna-hhga | INDEL | * | map_l250_m2_e0 | het | 95.7143 | 95.7143 | 95.7143 | 95.7282 | 201 | 9 | 201 | 9 | 2 | 22.2222 | |
| ndellapenna-hhga | INDEL | * | map_l250_m2_e0 | hetalt | 90.9091 | 83.3333 | 100.0000 | 97.9757 | 5 | 1 | 5 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | * | map_l250_m2_e0 | homalt | 97.8166 | 97.3913 | 98.2456 | 95.1136 | 112 | 3 | 112 | 2 | 1 | 50.0000 | |
| mlin-fermikit | INDEL | I1_5 | map_l250_m2_e0 | * | 50.9554 | 35.3982 | 90.9091 | 94.0860 | 40 | 73 | 40 | 4 | 3 | 75.0000 | |
| mlin-fermikit | INDEL | I1_5 | map_l250_m2_e0 | het | 49.4382 | 33.3333 | 95.6522 | 93.9314 | 22 | 44 | 22 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | I1_5 | map_l250_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 2 | 0 | 0 | 0 | ||||
| mlin-fermikit | INDEL | I1_5 | map_l250_m2_e0 | homalt | 54.5455 | 40.0000 | 85.7143 | 93.6937 | 18 | 27 | 18 | 3 | 3 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_l250_m2_e0 | * | 95.7507 | 91.8478 | 100.0000 | 92.2161 | 169 | 15 | 170 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D1_5 | map_l250_m2_e0 | het | 93.3921 | 87.6033 | 100.0000 | 89.4839 | 106 | 15 | 108 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D1_5 | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.9691 | 3 | 0 | 2 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D1_5 | map_l250_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 93.7695 | 60 | 0 | 60 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | map_l250_m2_e0 | * | 97.6744 | 95.4545 | 100.0000 | 93.9058 | 21 | 1 | 22 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C6_15 | map_l250_m2_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | C6_15 | map_l250_m2_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | C6_15 | map_l250_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | C6_15 | map_l250_m2_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l250_m2_e0 | * | 88.8889 | 80.0000 | 100.0000 | 95.1807 | 4 | 1 | 4 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l250_m2_e0 | het | 80.0000 | 66.6667 | 100.0000 | 96.0000 | 2 | 1 | 2 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.0000 | 1 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l250_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 95.6522 | 1 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I1_5 | map_l250_m2_e0 | * | 94.5577 | 92.0354 | 97.2222 | 94.2614 | 104 | 9 | 105 | 3 | 1 | 33.3333 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l250_m2_e0 | het | 91.9483 | 86.3636 | 98.3051 | 92.3575 | 57 | 9 | 58 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.0385 | 2 | 0 | 2 | 0 | 0 | ||