PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubset GenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
10151-10200 / 86044 show all
anovak-vgINDELD16_PLUSmap_l250_m2_e0hetalt
0.0000
0.0000
0.0000
01000
anovak-vgINDELD16_PLUSmap_l250_m2_e0homalt
100.0000
100.0000
100.0000
97.1429
10100
anovak-vgINDEL*map_l250_m2_e0*
67.7533
69.7885
65.8333
96.4399
23110023712363
51.2195
anovak-vgINDEL*map_l250_m2_e0het
65.7491
68.0952
63.5593
96.7649
143671508629
33.7209
anovak-vgINDEL*map_l250_m2_e0hetalt
0.0000
33.3333
0.0000
0.0000
24000
anovak-vgINDEL*map_l250_m2_e0homalt
72.3983
74.7826
70.1613
95.5950
8629873734
91.8919
qzeng-customINDELI6_15map_l250_m2_e0*
59.4595
50.0000
73.3333
97.3022
441141
25.0000
qzeng-customINDELI6_15map_l250_m2_e0het
58.5366
60.0000
57.1429
98.3683
32431
33.3333
qzeng-customINDELI6_15map_l250_m2_e0hetalt
0.0000
0.0000
100.0000
94.1176
00200
qzeng-customINDELI6_15map_l250_m2_e0homalt
47.6190
33.3333
83.3333
93.5484
12510
0.0000
qzeng-customINDELI16_PLUSmap_l250_m2_e0*
66.6667
100.0000
50.0000
96.3415
10330
0.0000
qzeng-customINDELI16_PLUSmap_l250_m2_e0het
75.0000
100.0000
60.0000
95.6897
10320
0.0000
qzeng-customINDELI16_PLUSmap_l250_m2_e0hetalt
0.0000
100.0000
00000
qzeng-customINDELI16_PLUSmap_l250_m2_e0homalt
0.0000
0.0000
97.0588
00010
0.0000
qzeng-customINDELI1_5map_l250_m2_e0*
70.0082
55.7522
94.0594
98.0524
63509564
66.6667
qzeng-customINDELI1_5map_l250_m2_e0het
75.4127
63.6364
92.5373
98.3941
42246254
80.0000
qzeng-customINDELI1_5map_l250_m2_e0hetalt
66.6667
50.0000
100.0000
96.5517
11300
qzeng-customINDELI1_5map_l250_m2_e0homalt
60.9137
44.4444
96.7742
96.6559
20253010
0.0000
qzeng-customSNPtimap_l250_m2_e0*
74.3996
62.1406
92.6844
95.5558
311218963104245206
84.0816
qzeng-customSNPtimap_l250_m2_e0het
74.6630
63.8291
89.9265
96.4842
207711772080233195
83.6910
qzeng-customSNPtimap_l250_m2_e0hetalt
57.1429
40.0000
100.0000
97.3333
23200
qzeng-customSNPtimap_l250_m2_e0homalt
73.9407
59.0623
98.8395
89.1089
103371610221211
91.6667
qzeng-customSNPtvmap_l250_m2_e0*
77.9675
67.2797
92.6923
95.3450
19399431928152125
82.2368
qzeng-customSNPtvmap_l250_m2_e0het
78.8333
69.8969
90.3898
96.1692
13565841345143116
81.1189
qzeng-customSNPtvmap_l250_m2_e0hetalt
57.1429
40.0000
100.0000
98.3740
23200
qzeng-customSNPtvmap_l250_m2_e0homalt
76.0969
62.0064
98.4746
89.6799
58135658199
100.0000
qzeng-customSNP*map_l250_m2_e0*
75.7461
64.0330
92.7037
95.4455
504928365006394328
83.2487
qzeng-customSNP*map_l250_m2_e0het
76.2572
66.0955
90.1111
96.3398
343317613408374309
82.6203
qzeng-customSNP*map_l250_m2_e0hetalt
57.1429
40.0000
100.0000
98.3740
23200
qzeng-customSNP*map_l250_m2_e0homalt
74.7183
60.0894
98.7624
89.3086
1614107215962019
95.0000
qzeng-customINDELD6_15map_l250_m2_e0*
66.1017
59.0909
75.0000
98.0276
1391552
40.0000
qzeng-customINDELD6_15map_l250_m2_e0het
64.2336
57.1429
73.3333
98.2935
861142
50.0000
qzeng-customINDELD6_15map_l250_m2_e0hetalt
0.0000
100.0000
0.0000
0.0000
20000
qzeng-customINDELD6_15map_l250_m2_e0homalt
61.5385
50.0000
80.0000
96.2963
33410
0.0000
ndellapenna-hhgaINDELD6_15map_l250_m2_e0*
95.4545
95.4545
95.4545
96.1131
2112110
0.0000
ndellapenna-hhgaINDELD6_15map_l250_m2_e0het
96.5517
100.0000
93.3333
96.0317
1401410
0.0000
ndellapenna-hhgaINDELD6_15map_l250_m2_e0hetalt
66.6667
50.0000
100.0000
96.9697
11100
ndellapenna-hhgaINDELD6_15map_l250_m2_e0homalt
100.0000
100.0000
100.0000
96.1290
60600
ndellapenna-hhgaINDELD16_PLUSmap_l250_m2_e0*
90.9091
100.0000
83.3333
95.3125
50510
0.0000
ndellapenna-hhgaINDELD16_PLUSmap_l250_m2_e0het
85.7143
100.0000
75.0000
95.5056
30310
0.0000
ndellapenna-hhgaINDELD16_PLUSmap_l250_m2_e0hetalt
100.0000
100.0000
100.0000
80.0000
10100
ndellapenna-hhgaINDELD16_PLUSmap_l250_m2_e0homalt
100.0000
100.0000
100.0000
97.0588
10100
ndellapenna-hhgaINDELD1_5map_l250_m2_e0*
96.7033
95.6522
97.7778
95.0685
176817642
50.0000
ndellapenna-hhgaINDELD1_5map_l250_m2_e0het
95.8333
95.0413
96.6387
95.1009
115611542
50.0000
ndellapenna-hhgaINDELD1_5map_l250_m2_e0hetalt
100.0000
100.0000
100.0000
97.8261
30300
ndellapenna-hhgaINDELD1_5map_l250_m2_e0homalt
98.3051
96.6667
100.0000
94.6445
5825800
ndellapenna-hhgaINDELI1_5map_l250_m2_e0hetalt
100.0000
100.0000
100.0000
98.7421
20200
ndellapenna-hhgaINDELI1_5map_l250_m2_e0homalt
96.7033
97.7778
95.6522
95.2965
4414421
50.0000
ndellapenna-hhgaINDELI6_15map_l250_m2_e0*
87.5000
87.5000
87.5000
96.8127
71710
0.0000
ndellapenna-hhgaINDELI6_15map_l250_m2_e0het
80.0000
80.0000
80.0000
96.8944
41410
0.0000