PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
9701-9750 / 86044 show all | |||||||||||||||
| ckim-isaac | SNP | tv | map_l250_m2_e0 | * | 60.1307 | 43.0951 | 99.4396 | 91.3095 | 1242 | 1640 | 1242 | 7 | 1 | 14.2857 | |
| ckim-isaac | SNP | tv | map_l250_m2_e0 | het | 63.3205 | 46.4948 | 99.2299 | 92.2101 | 902 | 1038 | 902 | 7 | 1 | 14.2857 | |
| ckim-isaac | SNP | tv | map_l250_m2_e0 | hetalt | 57.1429 | 40.0000 | 100.0000 | 93.7500 | 2 | 3 | 2 | 0 | 0 | ||
| ckim-isaac | SNP | tv | map_l250_m2_e0 | homalt | 53.0196 | 36.0726 | 100.0000 | 87.3075 | 338 | 599 | 338 | 0 | 0 | ||
| ckim-vqsr | INDEL | * | map_l250_m2_e0 | * | 93.4524 | 94.8640 | 92.0821 | 97.4260 | 314 | 17 | 314 | 27 | 2 | 7.4074 | |
| ckim-vqsr | INDEL | * | map_l250_m2_e0 | het | 90.9931 | 93.8095 | 88.3408 | 97.8444 | 197 | 13 | 197 | 26 | 1 | 3.8462 | |
| ckim-vqsr | INDEL | * | map_l250_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 98.4496 | 4 | 2 | 4 | 0 | 0 | ||
| ckim-vqsr | INDEL | * | map_l250_m2_e0 | homalt | 98.6900 | 98.2609 | 99.1228 | 95.6900 | 113 | 2 | 113 | 1 | 1 | 100.0000 | |
| ckim-vqsr | INDEL | C16_PLUS | map_l250_m2_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | INDEL | C16_PLUS | map_l250_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | INDEL | C16_PLUS | map_l250_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | INDEL | C16_PLUS | map_l250_m2_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | SNP | ti | map_l250_m2_e0 | * | 66.8081 | 50.2995 | 99.4473 | 90.8038 | 2519 | 2489 | 2519 | 14 | 3 | 21.4286 | |
| ckim-isaac | SNP | ti | map_l250_m2_e0 | het | 69.1244 | 53.0117 | 99.3092 | 92.1654 | 1725 | 1529 | 1725 | 12 | 1 | 8.3333 | |
| ckim-isaac | SNP | ti | map_l250_m2_e0 | hetalt | 57.1429 | 40.0000 | 100.0000 | 90.4762 | 2 | 3 | 2 | 0 | 0 | ||
| ckim-isaac | SNP | ti | map_l250_m2_e0 | homalt | 62.2886 | 45.2830 | 99.7481 | 85.1339 | 792 | 957 | 792 | 2 | 2 | 100.0000 | |
| ckim-isaac | INDEL | I16_PLUS | map_l250_m2_e0 | * | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| ckim-isaac | INDEL | I16_PLUS | map_l250_m2_e0 | het | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| ckim-isaac | INDEL | I16_PLUS | map_l250_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-isaac | INDEL | I16_PLUS | map_l250_m2_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | SNP | tv | map_l250_m2_e0 | * | 84.9127 | 95.5933 | 76.3788 | 91.3348 | 2755 | 127 | 2742 | 848 | 31 | 3.6557 | |
| gduggal-snapvard | SNP | tv | map_l250_m2_e0 | het | 80.4626 | 96.7526 | 68.8676 | 92.0365 | 1877 | 63 | 1867 | 844 | 29 | 3.4360 | |
| gduggal-snapvard | SNP | tv | map_l250_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 5 | 0 | 0 | 0 | |||
| gduggal-snapvard | SNP | tv | map_l250_m2_e0 | homalt | 96.5358 | 93.7033 | 99.5449 | 88.1007 | 878 | 59 | 875 | 4 | 2 | 50.0000 | |
| ghariani-varprowl | INDEL | * | map_l250_m2_e0 | * | 87.7841 | 93.3535 | 82.8418 | 98.1723 | 309 | 22 | 309 | 64 | 12 | 18.7500 | |
| ghariani-varprowl | INDEL | * | map_l250_m2_e0 | het | 86.0169 | 96.6667 | 77.4809 | 97.4752 | 203 | 7 | 203 | 59 | 10 | 16.9492 | |
| ghariani-varprowl | INDEL | * | map_l250_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 6 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | * | map_l250_m2_e0 | homalt | 93.8053 | 92.1739 | 95.4955 | 94.7243 | 106 | 9 | 106 | 5 | 2 | 40.0000 | |
| gduggal-snapvard | SNP | * | map_l250_m2_e0 | * | 86.3034 | 95.4344 | 78.7671 | 91.5243 | 7525 | 360 | 7449 | 2008 | 101 | 5.0299 | |
| gduggal-snapvard | SNP | * | map_l250_m2_e0 | het | 81.9515 | 96.3612 | 71.2908 | 92.3358 | 5005 | 189 | 4954 | 1995 | 92 | 4.6115 | |
| gduggal-snapvard | SNP | * | map_l250_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 5 | 0 | 0 | 0 | |||
| gduggal-snapvard | SNP | * | map_l250_m2_e0 | homalt | 96.5678 | 93.8198 | 99.4817 | 88.0057 | 2520 | 166 | 2495 | 13 | 9 | 69.2308 | |
| gduggal-snapvard | SNP | ti | map_l250_m2_e0 | * | 86.8868 | 95.2476 | 79.8754 | 91.6627 | 4770 | 238 | 4743 | 1195 | 72 | 6.0251 | |
| gduggal-snapvard | SNP | ti | map_l250_m2_e0 | het | 82.6056 | 96.1278 | 72.4186 | 92.5288 | 3128 | 126 | 3114 | 1186 | 65 | 5.4806 | |
| gduggal-snapvard | SNP | ti | map_l250_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 5 | 0 | 0 | 0 | |||
| gduggal-snapvard | SNP | ti | map_l250_m2_e0 | homalt | 96.5862 | 93.8822 | 99.4505 | 88.0158 | 1642 | 107 | 1629 | 9 | 7 | 77.7778 | |
| ghariani-varprowl | INDEL | C1_5 | map_l250_m2_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | C1_5 | map_l250_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | C1_5 | map_l250_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | C1_5 | map_l250_m2_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | C6_15 | map_l250_m2_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | C6_15 | map_l250_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | C6_15 | map_l250_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | C6_15 | map_l250_m2_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | C16_PLUS | map_l250_m2_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | C16_PLUS | map_l250_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | C16_PLUS | map_l250_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | C16_PLUS | map_l250_m2_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | I6_15 | map_l250_m2_e0 | * | 45.4545 | 50.0000 | 41.6667 | 93.4426 | 4 | 4 | 10 | 14 | 10 | 71.4286 | |
| gduggal-snapvard | INDEL | I6_15 | map_l250_m2_e0 | het | 54.7945 | 80.0000 | 41.6667 | 92.9412 | 4 | 1 | 10 | 14 | 10 | 71.4286 | |