PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
9651-9700 / 86044 show all | |||||||||||||||
| eyeh-varpipe | INDEL | D6_15 | map_l250_m2_e0 | hetalt | 0.0000 | 0.0000 | 100.0000 | 95.7447 | 0 | 2 | 2 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D6_15 | map_l250_m2_e0 | homalt | 86.0215 | 83.3333 | 88.8889 | 96.3563 | 5 | 1 | 8 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | C1_5 | map_l250_m2_e0 | * | 0.0000 | 0.0000 | 100.0000 | 98.4014 | 0 | 0 | 9 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C1_5 | map_l250_m2_e0 | het | 0.0000 | 0.0000 | 100.0000 | 98.1073 | 0 | 0 | 6 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C1_5 | map_l250_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | C1_5 | map_l250_m2_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 98.3146 | 0 | 0 | 3 | 0 | 0 | ||
| egarrison-hhga | INDEL | C6_15 | map_l250_m2_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| egarrison-hhga | INDEL | C6_15 | map_l250_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| egarrison-hhga | INDEL | C6_15 | map_l250_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| egarrison-hhga | INDEL | C6_15 | map_l250_m2_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| egarrison-hhga | INDEL | C16_PLUS | map_l250_m2_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| egarrison-hhga | INDEL | C16_PLUS | map_l250_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| egarrison-hhga | INDEL | C16_PLUS | map_l250_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| egarrison-hhga | INDEL | C16_PLUS | map_l250_m2_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| egarrison-hhga | INDEL | C1_5 | map_l250_m2_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| egarrison-hhga | INDEL | C1_5 | map_l250_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| egarrison-hhga | INDEL | C1_5 | map_l250_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| egarrison-hhga | INDEL | C1_5 | map_l250_m2_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| egarrison-hhga | INDEL | D1_5 | map_l250_m2_e0 | * | 97.2678 | 96.7391 | 97.8022 | 95.3842 | 178 | 6 | 178 | 4 | 2 | 50.0000 | |
| egarrison-hhga | INDEL | D1_5 | map_l250_m2_e0 | het | 96.6942 | 96.6942 | 96.6942 | 95.4167 | 117 | 4 | 117 | 4 | 2 | 50.0000 | |
| egarrison-hhga | INDEL | D1_5 | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.6923 | 3 | 0 | 3 | 0 | 0 | ||
| egarrison-hhga | INDEL | D1_5 | map_l250_m2_e0 | homalt | 98.3051 | 96.6667 | 100.0000 | 95.0554 | 58 | 2 | 58 | 0 | 0 | ||
| egarrison-hhga | INDEL | D6_15 | map_l250_m2_e0 | * | 97.6744 | 95.4545 | 100.0000 | 95.9064 | 21 | 1 | 21 | 0 | 0 | ||
| egarrison-hhga | INDEL | D6_15 | map_l250_m2_e0 | het | 100.0000 | 100.0000 | 100.0000 | 95.9420 | 14 | 0 | 14 | 0 | 0 | ||
| egarrison-hhga | INDEL | D6_15 | map_l250_m2_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 96.5517 | 1 | 1 | 1 | 0 | 0 | ||
| egarrison-hhga | INDEL | D6_15 | map_l250_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 95.6835 | 6 | 0 | 6 | 0 | 0 | ||
| egarrison-hhga | INDEL | D16_PLUS | map_l250_m2_e0 | * | 100.0000 | 100.0000 | 100.0000 | 95.8678 | 5 | 0 | 5 | 0 | 0 | ||
| egarrison-hhga | INDEL | D16_PLUS | map_l250_m2_e0 | het | 100.0000 | 100.0000 | 100.0000 | 96.3415 | 3 | 0 | 3 | 0 | 0 | ||
| egarrison-hhga | INDEL | D16_PLUS | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 80.0000 | 1 | 0 | 1 | 0 | 0 | ||
| egarrison-hhga | INDEL | D16_PLUS | map_l250_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.0588 | 1 | 0 | 1 | 0 | 0 | ||
| dgrover-gatk | SNP | tv | map_l250_m2_e0 | * | 98.1257 | 98.0916 | 98.1597 | 90.1683 | 2827 | 55 | 2827 | 53 | 12 | 22.6415 | |
| dgrover-gatk | SNP | tv | map_l250_m2_e0 | het | 97.7378 | 97.9897 | 97.4872 | 91.2583 | 1901 | 39 | 1901 | 49 | 9 | 18.3673 | |
| dgrover-gatk | SNP | tv | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.0000 | 5 | 0 | 5 | 0 | 0 | ||
| dgrover-gatk | SNP | tv | map_l250_m2_e0 | homalt | 98.9259 | 98.2924 | 99.5676 | 86.6638 | 921 | 16 | 921 | 4 | 3 | 75.0000 | |
| egarrison-hhga | INDEL | * | map_l250_m2_e0 | * | 96.3636 | 96.0725 | 96.6565 | 99.5239 | 318 | 13 | 318 | 11 | 3 | 27.2727 | |
| egarrison-hhga | INDEL | * | map_l250_m2_e0 | het | 95.9427 | 95.7143 | 96.1722 | 95.9846 | 201 | 9 | 201 | 8 | 2 | 25.0000 | |
| egarrison-hhga | INDEL | * | map_l250_m2_e0 | hetalt | 90.9091 | 83.3333 | 100.0000 | 97.8355 | 5 | 1 | 5 | 0 | 0 | ||
| egarrison-hhga | INDEL | * | map_l250_m2_e0 | homalt | 97.3913 | 97.3913 | 97.3913 | 95.3176 | 112 | 3 | 112 | 3 | 1 | 33.3333 | |
| ckim-isaac | SNP | * | map_l250_m2_e0 | * | 64.4492 | 47.6728 | 99.4444 | 90.9774 | 3759 | 4126 | 3759 | 21 | 4 | 19.0476 | |
| ckim-isaac | SNP | * | map_l250_m2_e0 | het | 67.0153 | 50.5776 | 99.2819 | 92.1809 | 2627 | 2567 | 2627 | 19 | 2 | 10.5263 | |
| ckim-isaac | SNP | * | map_l250_m2_e0 | hetalt | 57.1429 | 40.0000 | 100.0000 | 93.7500 | 2 | 3 | 2 | 0 | 0 | ||
| ckim-isaac | SNP | * | map_l250_m2_e0 | homalt | 59.1933 | 42.0700 | 99.8233 | 85.8571 | 1130 | 1556 | 1130 | 2 | 2 | 100.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l250_m2_e0 | * | 74.4444 | 59.2920 | 100.0000 | 97.1108 | 67 | 46 | 67 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | map_l250_m2_e0 | het | 80.0000 | 66.6667 | 100.0000 | 97.6190 | 44 | 22 | 44 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | map_l250_m2_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 98.9691 | 1 | 1 | 1 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | map_l250_m2_e0 | homalt | 65.6716 | 48.8889 | 100.0000 | 94.1176 | 22 | 23 | 22 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | map_l250_m2_e0 | * | 40.0000 | 25.0000 | 100.0000 | 99.0099 | 2 | 6 | 2 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | map_l250_m2_e0 | het | 33.3333 | 20.0000 | 100.0000 | 99.3548 | 1 | 4 | 1 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | map_l250_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-isaac | INDEL | I6_15 | map_l250_m2_e0 | homalt | 50.0000 | 33.3333 | 100.0000 | 95.8333 | 1 | 2 | 1 | 0 | 0 | ||