PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
9551-9600 / 86044 show all | |||||||||||||||
| ckim-vqsr | INDEL | I1_5 | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.3051 | 2 | 0 | 2 | 0 | 0 | ||
| ckim-vqsr | INDEL | I1_5 | map_l250_m2_e0 | homalt | 98.9011 | 100.0000 | 97.8261 | 95.2675 | 45 | 0 | 45 | 1 | 1 | 100.0000 | |
| ckim-vqsr | INDEL | I6_15 | map_l250_m2_e0 | * | 85.7143 | 75.0000 | 100.0000 | 98.6333 | 6 | 2 | 6 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | map_l250_m2_e0 | het | 88.8889 | 80.0000 | 100.0000 | 98.7421 | 4 | 1 | 4 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | map_l250_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-vqsr | INDEL | I6_15 | map_l250_m2_e0 | homalt | 80.0000 | 66.6667 | 100.0000 | 98.0583 | 2 | 1 | 2 | 0 | 0 | ||
| ckim-vqsr | INDEL | D6_15 | map_l250_m2_e0 | * | 100.0000 | 100.0000 | 100.0000 | 97.5637 | 22 | 0 | 22 | 0 | 0 | ||
| ckim-vqsr | INDEL | D6_15 | map_l250_m2_e0 | het | 100.0000 | 100.0000 | 100.0000 | 97.8979 | 14 | 0 | 14 | 0 | 0 | ||
| ckim-vqsr | INDEL | D6_15 | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.2973 | 2 | 0 | 2 | 0 | 0 | ||
| ckim-vqsr | INDEL | D6_15 | map_l250_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.3190 | 6 | 0 | 6 | 0 | 0 | ||
| ckim-vqsr | INDEL | C1_5 | map_l250_m2_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | INDEL | C1_5 | map_l250_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | INDEL | C1_5 | map_l250_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | INDEL | C1_5 | map_l250_m2_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| dgrover-gatk | INDEL | * | map_l250_m2_e0 | * | 96.0725 | 96.0725 | 96.0725 | 96.4988 | 318 | 13 | 318 | 13 | 3 | 23.0769 | |
| dgrover-gatk | INDEL | * | map_l250_m2_e0 | het | 95.7346 | 96.1905 | 95.2830 | 96.8183 | 202 | 8 | 202 | 10 | 1 | 10.0000 | |
| dgrover-gatk | INDEL | * | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.6562 | 6 | 0 | 6 | 0 | 0 | ||
| dgrover-gatk | INDEL | * | map_l250_m2_e0 | homalt | 96.4912 | 95.6522 | 97.3451 | 95.5424 | 110 | 5 | 110 | 3 | 2 | 66.6667 | |
| ckim-vqsr | SNP | ti | map_l250_m2_e0 | * | 59.5430 | 42.6717 | 98.4793 | 97.0358 | 2137 | 2871 | 2137 | 33 | 0 | 0.0000 | |
| ckim-vqsr | SNP | ti | map_l250_m2_e0 | het | 69.6152 | 53.9336 | 98.1544 | 97.0778 | 1755 | 1499 | 1755 | 33 | 0 | 0.0000 | |
| ckim-vqsr | SNP | ti | map_l250_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 5 | 0 | 0 | 0 | ||||
| ckim-vqsr | SNP | ti | map_l250_m2_e0 | homalt | 35.8517 | 21.8411 | 100.0000 | 96.8007 | 382 | 1367 | 382 | 0 | 0 | ||
| ckim-vqsr | SNP | tv | map_l250_m2_e0 | * | 58.5236 | 41.8112 | 97.4919 | 97.2532 | 1205 | 1677 | 1205 | 31 | 0 | 0.0000 | |
| ckim-vqsr | SNP | tv | map_l250_m2_e0 | het | 68.7313 | 53.1959 | 97.0837 | 97.2198 | 1032 | 908 | 1032 | 31 | 0 | 0.0000 | |
| ckim-vqsr | SNP | tv | map_l250_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 5 | 0 | 0 | 0 | ||||
| ckim-vqsr | SNP | tv | map_l250_m2_e0 | homalt | 31.1712 | 18.4632 | 100.0000 | 97.3922 | 173 | 764 | 173 | 0 | 0 | ||
| dgrover-gatk | INDEL | C1_5 | map_l250_m2_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| dgrover-gatk | INDEL | C1_5 | map_l250_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| dgrover-gatk | INDEL | C1_5 | map_l250_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| dgrover-gatk | INDEL | C1_5 | map_l250_m2_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| dgrover-gatk | INDEL | C6_15 | map_l250_m2_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| dgrover-gatk | INDEL | C6_15 | map_l250_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| dgrover-gatk | INDEL | C6_15 | map_l250_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| dgrover-gatk | INDEL | C6_15 | map_l250_m2_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| dgrover-gatk | INDEL | D16_PLUS | map_l250_m2_e0 | * | 72.7273 | 80.0000 | 66.6667 | 97.9933 | 4 | 1 | 4 | 2 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | map_l250_m2_e0 | het | 57.1429 | 66.6667 | 50.0000 | 98.1900 | 2 | 1 | 2 | 2 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.7500 | 1 | 0 | 1 | 0 | 0 | ||
| dgrover-gatk | INDEL | D16_PLUS | map_l250_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 98.3871 | 1 | 0 | 1 | 0 | 0 | ||
| dgrover-gatk | INDEL | C16_PLUS | map_l250_m2_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| dgrover-gatk | INDEL | C16_PLUS | map_l250_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| dgrover-gatk | INDEL | C16_PLUS | map_l250_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| dgrover-gatk | INDEL | C16_PLUS | map_l250_m2_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | SNP | * | map_l250_m2_e0 | * | 59.1976 | 42.3843 | 98.1210 | 97.1166 | 3342 | 4543 | 3342 | 64 | 0 | 0.0000 | |
| ckim-vqsr | SNP | * | map_l250_m2_e0 | het | 69.2853 | 53.6581 | 97.7552 | 97.1324 | 2787 | 2407 | 2787 | 64 | 0 | 0.0000 | |
| ckim-vqsr | SNP | * | map_l250_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 5 | 0 | 0 | 0 | ||||
| ckim-vqsr | SNP | * | map_l250_m2_e0 | homalt | 34.2487 | 20.6627 | 100.0000 | 97.0120 | 555 | 2131 | 555 | 0 | 0 | ||
| egarrison-hhga | SNP | * | map_l250_m2_e0 | * | 98.7146 | 97.8821 | 99.5614 | 88.2472 | 7718 | 167 | 7718 | 34 | 16 | 47.0588 | |
| egarrison-hhga | SNP | * | map_l250_m2_e0 | het | 98.3259 | 97.2468 | 99.4291 | 88.5758 | 5051 | 143 | 5051 | 29 | 11 | 37.9310 | |
| egarrison-hhga | SNP | * | map_l250_m2_e0 | hetalt | 75.0000 | 60.0000 | 100.0000 | 95.0820 | 3 | 2 | 3 | 0 | 0 | ||
| egarrison-hhga | SNP | * | map_l250_m2_e0 | homalt | 99.4958 | 99.1809 | 99.8127 | 87.5461 | 2664 | 22 | 2664 | 5 | 5 | 100.0000 | |