PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
9151-9200 / 86044 show all | |||||||||||||||
| ciseli-custom | SNP | ti | map_l250_m2_e0 | hetalt | 60.0000 | 60.0000 | 60.0000 | 83.3333 | 3 | 2 | 3 | 2 | 2 | 100.0000 | |
| ciseli-custom | SNP | ti | map_l250_m2_e0 | homalt | 82.1383 | 80.2173 | 84.1537 | 87.5709 | 1403 | 346 | 1402 | 264 | 189 | 71.5909 | |
| ciseli-custom | INDEL | D6_15 | map_l250_m2_e0 | * | 51.2821 | 45.4545 | 58.8235 | 97.9858 | 10 | 12 | 10 | 7 | 2 | 28.5714 | |
| ciseli-custom | INDEL | D6_15 | map_l250_m2_e0 | het | 40.0000 | 35.7143 | 45.4545 | 98.1788 | 5 | 9 | 5 | 6 | 1 | 16.6667 | |
| ciseli-custom | INDEL | D6_15 | map_l250_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 2 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | D6_15 | map_l250_m2_e0 | homalt | 83.3333 | 83.3333 | 83.3333 | 97.5000 | 5 | 1 | 5 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | I16_PLUS | map_l250_m2_e0 | * | 66.6667 | 100.0000 | 50.0000 | 99.3827 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I16_PLUS | map_l250_m2_e0 | het | 66.6667 | 100.0000 | 50.0000 | 98.8764 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I16_PLUS | map_l250_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-gatk | INDEL | I16_PLUS | map_l250_m2_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-gatk | INDEL | D1_5 | map_l250_m2_e0 | * | 92.1120 | 98.3696 | 86.6029 | 96.8600 | 181 | 3 | 181 | 28 | 1 | 3.5714 | |
| ckim-gatk | INDEL | D1_5 | map_l250_m2_e0 | het | 89.6296 | 100.0000 | 81.2081 | 97.1866 | 121 | 0 | 121 | 28 | 1 | 3.5714 | |
| ckim-gatk | INDEL | D1_5 | map_l250_m2_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 99.3902 | 1 | 2 | 1 | 0 | 0 | ||
| ckim-gatk | INDEL | D1_5 | map_l250_m2_e0 | homalt | 99.1597 | 98.3333 | 100.0000 | 95.0669 | 59 | 1 | 59 | 0 | 0 | ||
| ckim-gatk | INDEL | D6_15 | map_l250_m2_e0 | * | 97.7778 | 100.0000 | 95.6522 | 97.4558 | 22 | 0 | 22 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D6_15 | map_l250_m2_e0 | het | 96.5517 | 100.0000 | 93.3333 | 97.7511 | 14 | 0 | 14 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D6_15 | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.2973 | 2 | 0 | 2 | 0 | 0 | ||
| ckim-gatk | INDEL | D6_15 | map_l250_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.3190 | 6 | 0 | 6 | 0 | 0 | ||
| ckim-gatk | INDEL | I6_15 | map_l250_m2_e0 | * | 80.0000 | 75.0000 | 85.7143 | 98.4091 | 6 | 2 | 6 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | I6_15 | map_l250_m2_e0 | het | 80.0000 | 80.0000 | 80.0000 | 98.4326 | 4 | 1 | 4 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | I6_15 | map_l250_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-gatk | INDEL | I6_15 | map_l250_m2_e0 | homalt | 80.0000 | 66.6667 | 100.0000 | 98.0583 | 2 | 1 | 2 | 0 | 0 | ||
| ckim-gatk | SNP | * | map_l250_m2_e0 | * | 70.6281 | 55.4724 | 97.1784 | 96.2246 | 4374 | 3511 | 4374 | 127 | 10 | 7.8740 | |
| ckim-gatk | SNP | * | map_l250_m2_e0 | het | 73.8651 | 59.9923 | 96.0839 | 96.7509 | 3116 | 2078 | 3116 | 127 | 10 | 7.8740 | |
| ckim-gatk | SNP | * | map_l250_m2_e0 | hetalt | 33.3333 | 20.0000 | 100.0000 | 99.2366 | 1 | 4 | 1 | 0 | 0 | ||
| ckim-gatk | SNP | * | map_l250_m2_e0 | homalt | 63.7586 | 46.7982 | 100.0000 | 93.4789 | 1257 | 1429 | 1257 | 0 | 0 | ||
| ckim-gatk | SNP | ti | map_l250_m2_e0 | * | 71.3054 | 56.1701 | 97.6058 | 96.1011 | 2813 | 2195 | 2813 | 69 | 9 | 13.0435 | |
| ckim-gatk | SNP | ti | map_l250_m2_e0 | het | 74.5328 | 60.6638 | 96.6226 | 96.6749 | 1974 | 1280 | 1974 | 69 | 9 | 13.0435 | |
| ckim-gatk | SNP | ti | map_l250_m2_e0 | hetalt | 33.3333 | 20.0000 | 100.0000 | 98.7654 | 1 | 4 | 1 | 0 | 0 | ||
| ckim-gatk | SNP | ti | map_l250_m2_e0 | homalt | 64.7855 | 47.9131 | 100.0000 | 93.2398 | 838 | 911 | 838 | 0 | 0 | ||
| ckim-gatk | INDEL | I1_5 | map_l250_m2_e0 | * | 93.9655 | 96.4602 | 91.5966 | 97.4551 | 109 | 4 | 109 | 10 | 2 | 20.0000 | |
| ckim-gatk | INDEL | I1_5 | map_l250_m2_e0 | het | 91.1765 | 93.9394 | 88.5714 | 98.0474 | 62 | 4 | 62 | 8 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I1_5 | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.3051 | 2 | 0 | 2 | 0 | 0 | ||
| ckim-gatk | INDEL | I1_5 | map_l250_m2_e0 | homalt | 97.8261 | 100.0000 | 95.7447 | 95.1696 | 45 | 0 | 45 | 2 | 2 | 100.0000 | |
| ckim-gatk | INDEL | D16_PLUS | map_l250_m2_e0 | * | 83.3333 | 100.0000 | 71.4286 | 98.2968 | 5 | 0 | 5 | 2 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D16_PLUS | map_l250_m2_e0 | het | 75.0000 | 100.0000 | 60.0000 | 98.4520 | 3 | 0 | 3 | 2 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D16_PLUS | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.1176 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-gatk | INDEL | D16_PLUS | map_l250_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 98.5915 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-isaac | INDEL | C1_5 | map_l250_m2_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | C1_5 | map_l250_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | C1_5 | map_l250_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | C1_5 | map_l250_m2_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | * | map_l250_m2_e0 | * | 66.1323 | 49.8489 | 98.2143 | 97.1370 | 165 | 166 | 165 | 3 | 3 | 100.0000 | |
| ckim-isaac | INDEL | * | map_l250_m2_e0 | het | 69.7358 | 54.2857 | 97.4790 | 97.5555 | 114 | 96 | 116 | 3 | 3 | 100.0000 | |
| ckim-isaac | INDEL | * | map_l250_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 98.9011 | 4 | 2 | 2 | 0 | 0 | ||
| ckim-isaac | INDEL | * | map_l250_m2_e0 | homalt | 58.0247 | 40.8696 | 100.0000 | 94.2543 | 47 | 68 | 47 | 0 | 0 | ||
| ckim-isaac | INDEL | C16_PLUS | map_l250_m2_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | C16_PLUS | map_l250_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | C16_PLUS | map_l250_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | C16_PLUS | map_l250_m2_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||