PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
8801-8850 / 86044 show all | |||||||||||||||
| gduggal-snapfb | INDEL | I16_PLUS | map_l250_m2_e1 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I16_PLUS | map_l250_m2_e1 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I16_PLUS | map_l250_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I16_PLUS | map_l250_m2_e1 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I1_5 | map_l250_m2_e1 | * | 91.7031 | 92.1053 | 91.3043 | 96.6628 | 105 | 9 | 105 | 10 | 3 | 30.0000 | |
| gduggal-snapfb | INDEL | I1_5 | map_l250_m2_e1 | het | 89.9225 | 87.8788 | 92.0635 | 96.1632 | 58 | 8 | 58 | 5 | 1 | 20.0000 | |
| gduggal-snapfb | INDEL | I1_5 | map_l250_m2_e1 | hetalt | 66.6667 | 100.0000 | 50.0000 | 97.0370 | 2 | 0 | 2 | 2 | 0 | 0.0000 | |
| gduggal-snapfb | INDEL | I1_5 | map_l250_m2_e1 | homalt | 95.7447 | 97.8261 | 93.7500 | 97.1240 | 45 | 1 | 45 | 3 | 2 | 66.6667 | |
| gduggal-bwaplat | INDEL | I6_15 | map_l250_m2_e1 | * | 54.5455 | 37.5000 | 100.0000 | 99.2063 | 3 | 5 | 3 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_l250_m2_e1 | het | 57.1429 | 40.0000 | 100.0000 | 99.3007 | 2 | 3 | 2 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_l250_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | I6_15 | map_l250_m2_e1 | homalt | 50.0000 | 33.3333 | 100.0000 | 98.3871 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-bwavard | INDEL | * | map_l250_m2_e1 | * | 83.5781 | 93.9940 | 75.2404 | 96.4341 | 313 | 20 | 313 | 103 | 15 | 14.5631 | |
| gduggal-bwavard | INDEL | * | map_l250_m2_e1 | het | 79.5322 | 97.1564 | 67.3203 | 96.9369 | 205 | 6 | 206 | 100 | 13 | 13.0000 | |
| gduggal-bwavard | INDEL | * | map_l250_m2_e1 | hetalt | 0.0000 | 16.6667 | 0.0000 | 0.0000 | 1 | 5 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | * | map_l250_m2_e1 | homalt | 94.6903 | 92.2414 | 97.2727 | 93.4368 | 107 | 9 | 107 | 3 | 2 | 66.6667 | |
| gduggal-bwaplat | INDEL | I1_5 | map_l250_m2_e1 | * | 55.6962 | 38.5965 | 100.0000 | 99.0340 | 44 | 70 | 44 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | map_l250_m2_e1 | het | 63.9175 | 46.9697 | 100.0000 | 99.0657 | 31 | 35 | 31 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | map_l250_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 2 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | I1_5 | map_l250_m2_e1 | homalt | 44.0678 | 28.2609 | 100.0000 | 98.6762 | 13 | 33 | 13 | 0 | 0 | ||
| gduggal-bwaplat | SNP | ti | map_l250_m2_e1 | * | 56.1811 | 39.1253 | 99.5990 | 97.1464 | 1986 | 3090 | 1987 | 8 | 2 | 25.0000 | |
| gduggal-bwaplat | SNP | ti | map_l250_m2_e1 | het | 59.7244 | 42.6796 | 99.4358 | 97.5469 | 1408 | 1891 | 1410 | 8 | 2 | 25.0000 | |
| gduggal-bwaplat | SNP | ti | map_l250_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 5 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | SNP | ti | map_l250_m2_e1 | homalt | 49.1915 | 32.6185 | 100.0000 | 95.2072 | 578 | 1194 | 577 | 0 | 0 | ||
| gduggal-bwaplat | SNP | tv | map_l250_m2_e1 | * | 50.6394 | 33.9506 | 99.5976 | 97.7410 | 990 | 1926 | 990 | 4 | 1 | 25.0000 | |
| gduggal-bwaplat | SNP | tv | map_l250_m2_e1 | het | 54.4177 | 37.4555 | 99.4595 | 98.0055 | 736 | 1229 | 736 | 4 | 1 | 25.0000 | |
| gduggal-bwaplat | SNP | tv | map_l250_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 5 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | SNP | tv | map_l250_m2_e1 | homalt | 42.3333 | 26.8499 | 100.0000 | 96.2581 | 254 | 692 | 254 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | map_l250_m2_e1 | * | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | I16_PLUS | map_l250_m2_e1 | het | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | I16_PLUS | map_l250_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | I16_PLUS | map_l250_m2_e1 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwavard | INDEL | C16_PLUS | map_l250_m2_e1 | * | 0.0000 | 0.0000 | 98.0000 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-bwavard | INDEL | C16_PLUS | map_l250_m2_e1 | het | 0.0000 | 0.0000 | 97.7778 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-bwavard | INDEL | C16_PLUS | map_l250_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | C16_PLUS | map_l250_m2_e1 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | SNP | * | map_l250_m2_e1 | * | 54.2324 | 37.2605 | 99.5985 | 97.3745 | 2976 | 5011 | 2977 | 12 | 3 | 25.0000 | |
| gduggal-bwaplat | SNP | * | map_l250_m2_e1 | het | 57.7898 | 40.7295 | 99.4439 | 97.7262 | 2144 | 3120 | 2146 | 12 | 3 | 25.0000 | |
| gduggal-bwaplat | SNP | * | map_l250_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 5 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | SNP | * | map_l250_m2_e1 | homalt | 46.8732 | 30.6107 | 100.0000 | 95.5861 | 832 | 1886 | 831 | 0 | 0 | ||
| gduggal-bwaplat | SNP | * | map_l250_m2_e0 | * | 54.0835 | 37.1211 | 99.5918 | 97.3661 | 2927 | 4958 | 2928 | 12 | 3 | 25.0000 | |
| gduggal-bwaplat | SNP | * | map_l250_m2_e0 | het | 57.5846 | 40.5275 | 99.4337 | 97.7208 | 2105 | 3089 | 2107 | 12 | 3 | 25.0000 | |
| gduggal-bwaplat | SNP | * | map_l250_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 5 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | SNP | * | map_l250_m2_e0 | homalt | 46.8643 | 30.6031 | 100.0000 | 95.5710 | 822 | 1864 | 821 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | map_l250_m2_e0 | * | 55.1282 | 38.0531 | 100.0000 | 99.0247 | 43 | 70 | 43 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | map_l250_m2_e0 | het | 63.9175 | 46.9697 | 100.0000 | 99.0309 | 31 | 35 | 31 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | map_l250_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 2 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | I1_5 | map_l250_m2_e0 | homalt | 42.1053 | 26.6667 | 100.0000 | 98.7487 | 12 | 33 | 12 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_l250_m2_e0 | * | 54.5455 | 37.5000 | 100.0000 | 99.1690 | 3 | 5 | 3 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_l250_m2_e0 | het | 57.1429 | 40.0000 | 100.0000 | 99.2701 | 2 | 3 | 2 | 0 | 0 | ||