PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
8701-8750 / 86044 show all | |||||||||||||||
| gduggal-bwafb | INDEL | I6_15 | map_l250_m2_e1 | * | 80.0000 | 75.0000 | 85.7143 | 95.6522 | 6 | 2 | 6 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | map_l250_m2_e1 | het | 75.0000 | 60.0000 | 100.0000 | 96.8421 | 3 | 2 | 3 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I6_15 | map_l250_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | I6_15 | map_l250_m2_e1 | homalt | 85.7143 | 100.0000 | 75.0000 | 93.1034 | 3 | 0 | 3 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l250_m2_e1 | * | 80.0000 | 80.0000 | 80.0000 | 94.7368 | 4 | 1 | 4 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l250_m2_e1 | het | 100.0000 | 100.0000 | 100.0000 | 93.6170 | 3 | 0 | 3 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D16_PLUS | map_l250_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| gduggal-bwafb | INDEL | D16_PLUS | map_l250_m2_e1 | homalt | 66.6667 | 100.0000 | 50.0000 | 95.8333 | 1 | 0 | 1 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | SNP | ti | map_l250_m2_e1 | * | 98.0431 | 97.7147 | 98.3737 | 89.9899 | 4960 | 116 | 4960 | 82 | 25 | 30.4878 | |
| gduggal-bwafb | SNP | ti | map_l250_m2_e1 | het | 97.5129 | 97.4538 | 97.5721 | 90.4931 | 3215 | 84 | 3215 | 80 | 23 | 28.7500 | |
| gduggal-bwafb | SNP | ti | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 88.0952 | 5 | 0 | 5 | 0 | 0 | ||
| gduggal-bwafb | SNP | ti | map_l250_m2_e1 | homalt | 99.0324 | 98.1941 | 99.8852 | 88.8818 | 1740 | 32 | 1740 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | I1_5 | map_l250_m2_e1 | * | 95.0673 | 92.9825 | 97.2477 | 96.1714 | 106 | 8 | 106 | 3 | 1 | 33.3333 | |
| gduggal-bwafb | INDEL | I1_5 | map_l250_m2_e1 | het | 92.8000 | 87.8788 | 98.3051 | 96.4393 | 58 | 8 | 58 | 1 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | I1_5 | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.1651 | 2 | 0 | 2 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I1_5 | map_l250_m2_e1 | homalt | 97.8723 | 100.0000 | 95.8333 | 95.5597 | 46 | 0 | 46 | 2 | 1 | 50.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | map_l250_m2_e1 | * | 46.1538 | 60.0000 | 37.5000 | 97.1119 | 3 | 2 | 3 | 5 | 2 | 40.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | map_l250_m2_e1 | het | 44.4444 | 66.6667 | 33.3333 | 97.5207 | 2 | 1 | 2 | 4 | 1 | 25.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | map_l250_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | D16_PLUS | map_l250_m2_e1 | homalt | 66.6667 | 100.0000 | 50.0000 | 94.2857 | 1 | 0 | 1 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | map_l250_m2_e1 | * | 66.6667 | 100.0000 | 50.0000 | 97.7778 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | map_l250_m2_e1 | het | 66.6667 | 100.0000 | 50.0000 | 97.5610 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | map_l250_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | I16_PLUS | map_l250_m2_e1 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwavard | INDEL | C6_15 | map_l250_m2_e1 | * | 0.0000 | 0.0000 | 99.1525 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-bwavard | INDEL | C6_15 | map_l250_m2_e1 | het | 0.0000 | 0.0000 | 99.1228 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-bwavard | INDEL | C6_15 | map_l250_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | C6_15 | map_l250_m2_e1 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwavard | INDEL | D6_15 | map_l250_m2_e1 | * | 88.3721 | 86.3636 | 90.4762 | 97.2477 | 19 | 3 | 19 | 2 | 1 | 50.0000 | |
| gduggal-bwavard | INDEL | D6_15 | map_l250_m2_e1 | het | 93.3333 | 100.0000 | 87.5000 | 97.5904 | 14 | 0 | 14 | 2 | 1 | 50.0000 | |
| gduggal-bwavard | INDEL | D6_15 | map_l250_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 2 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | D6_15 | map_l250_m2_e1 | homalt | 90.9091 | 83.3333 | 100.0000 | 94.9495 | 5 | 1 | 5 | 0 | 0 | ||
| gduggal-bwavard | INDEL | C1_5 | map_l250_m2_e1 | * | 0.0000 | 0.0000 | 30.7692 | 98.3269 | 0 | 0 | 4 | 9 | 1 | 11.1111 | |
| gduggal-bwavard | INDEL | C1_5 | map_l250_m2_e1 | het | 0.0000 | 0.0000 | 18.1818 | 98.3942 | 0 | 0 | 2 | 9 | 1 | 11.1111 | |
| gduggal-bwavard | INDEL | C1_5 | map_l250_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | C1_5 | map_l250_m2_e1 | homalt | 0.0000 | 0.0000 | 100.0000 | 97.8261 | 0 | 0 | 2 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I1_5 | map_l250_m2_e1 | * | 88.2633 | 92.9825 | 84.0000 | 96.7235 | 106 | 8 | 105 | 20 | 5 | 25.0000 | |
| gduggal-bwavard | INDEL | I1_5 | map_l250_m2_e1 | het | 85.5453 | 95.4545 | 77.5000 | 97.4992 | 63 | 3 | 62 | 18 | 4 | 22.2222 | |
| gduggal-bwavard | INDEL | I1_5 | map_l250_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 2 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | I1_5 | map_l250_m2_e1 | homalt | 94.5055 | 93.4783 | 95.5556 | 92.6948 | 43 | 3 | 43 | 2 | 1 | 50.0000 | |
| gduggal-bwavard | INDEL | D1_5 | map_l250_m2_e1 | * | 83.9566 | 96.2162 | 74.4681 | 95.7604 | 178 | 7 | 175 | 60 | 4 | 6.6667 | |
| gduggal-bwavard | INDEL | D1_5 | map_l250_m2_e1 | het | 79.4702 | 98.3607 | 66.6667 | 96.2081 | 120 | 2 | 120 | 60 | 4 | 6.6667 | |
| gduggal-bwavard | INDEL | D1_5 | map_l250_m2_e1 | hetalt | 0.0000 | 33.3333 | 0.0000 | 0.0000 | 1 | 2 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | map_l250_m2_e1 | homalt | 97.4359 | 95.0000 | 100.0000 | 93.0905 | 57 | 3 | 55 | 0 | 0 | ||
| eyeh-varpipe | SNP | tv | map_l250_m2_e1 | * | 98.7186 | 99.5542 | 97.8969 | 90.7430 | 2903 | 13 | 2886 | 62 | 6 | 9.6774 | |
| eyeh-varpipe | SNP | tv | map_l250_m2_e1 | het | 98.2749 | 99.5420 | 97.0396 | 91.1568 | 1956 | 9 | 1934 | 59 | 4 | 6.7797 | |
| eyeh-varpipe | SNP | tv | map_l250_m2_e1 | hetalt | 97.4359 | 100.0000 | 95.0000 | 88.0952 | 5 | 0 | 19 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | tv | map_l250_m2_e1 | homalt | 99.6815 | 99.5772 | 99.7861 | 89.7714 | 942 | 4 | 933 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | C1_5 | map_l250_m2_e1 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | C1_5 | map_l250_m2_e1 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||