PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
85801-85850 / 86044 show all | |||||||||||||||
| gduggal-snapvard | SNP | ti | * | * | 99.1158 | 98.9272 | 99.3052 | 22.3384 | 2063143 | 22374 | 2054412 | 14373 | 2372 | 16.5032 | |
| gduggal-snapvard | SNP | ti | * | het | 98.9307 | 98.9471 | 98.9142 | 25.7701 | 1268399 | 13497 | 1263991 | 13875 | 2046 | 14.7459 | |
| gduggal-snapvard | SNP | ti | * | hetalt | 0.0000 | 1.0309 | 0.0000 | 0.0000 | 6 | 576 | 0 | 0 | 0 | ||
| gduggal-snapvard | SNP | ti | * | homalt | 99.4493 | 98.9663 | 99.9370 | 16.0694 | 794738 | 8301 | 790421 | 498 | 326 | 65.4618 | |
| gduggal-snapvard | SNP | tv | * | * | 98.9298 | 98.8902 | 98.9694 | 27.3396 | 958936 | 10762 | 953959 | 9934 | 1577 | 15.8748 | |
| gduggal-snapvard | SNP | tv | * | het | 98.6977 | 99.0250 | 98.3726 | 31.6253 | 585935 | 5769 | 583366 | 9651 | 1423 | 14.7446 | |
| gduggal-snapvard | SNP | tv | * | hetalt | 0.0000 | 0.6889 | 0.0000 | 0.0000 | 6 | 865 | 0 | 0 | 0 | ||
| gduggal-snapvard | SNP | tv | * | homalt | 99.4119 | 98.9054 | 99.9237 | 19.2463 | 372995 | 4128 | 370593 | 283 | 154 | 54.4170 | |
| gduggal-snapvard | SNP | * | * | * | 99.0871 | 98.9341 | 99.2406 | 23.7872 | 3022073 | 32560 | 3000636 | 22962 | 3691 | 16.0744 | |
| gduggal-snapvard | SNP | * | * | het | 98.8907 | 98.9717 | 98.8098 | 27.4520 | 1854334 | 19266 | 1842523 | 22194 | 3216 | 14.4904 | |
| gduggal-snapvard | SNP | * | * | hetalt | 0.0000 | 0.6889 | 0.0000 | 0.0000 | 6 | 865 | 0 | 0 | 0 | ||
| gduggal-snapvard | SNP | * | * | homalt | 99.4378 | 98.9468 | 99.9337 | 17.0443 | 1167733 | 12429 | 1158113 | 768 | 475 | 61.8490 | |
| ghariani-varprowl | INDEL | C6_15 | * | * | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 7 | 0 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | C6_15 | * | het | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 7 | 0 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | C6_15 | * | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | C6_15 | * | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | * | * | * | 87.2025 | 87.3272 | 87.0781 | 72.0067 | 300877 | 43663 | 300632 | 44612 | 40345 | 90.4353 | |
| ghariani-varprowl | INDEL | * | * | het | 89.6326 | 98.5731 | 82.1789 | 64.2989 | 191361 | 2770 | 191449 | 41517 | 38150 | 91.8901 | |
| ghariani-varprowl | INDEL | * | * | hetalt | 0.0000 | 0.8995 | 0.0000 | 0.0000 | 227 | 25010 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | * | * | homalt | 92.0100 | 87.3111 | 97.2434 | 45.5820 | 109289 | 15883 | 109183 | 3095 | 2195 | 70.9208 | |
| mlin-fermikit | INDEL | D1_5 | * | * | 96.7247 | 95.7954 | 97.6723 | 56.1904 | 140575 | 6170 | 140399 | 3346 | 3212 | 95.9952 | |
| mlin-fermikit | INDEL | D1_5 | * | het | 97.6071 | 97.5792 | 97.6350 | 51.6497 | 85454 | 2120 | 85333 | 2067 | 1958 | 94.7267 | |
| mlin-fermikit | INDEL | D1_5 | * | hetalt | 80.4314 | 67.3987 | 99.7126 | 64.5076 | 6905 | 3340 | 6939 | 20 | 20 | 100.0000 | |
| mlin-fermikit | INDEL | D1_5 | * | homalt | 97.9967 | 98.5488 | 97.4507 | 61.3393 | 48216 | 710 | 48127 | 1259 | 1234 | 98.0143 | |
| mlin-fermikit | INDEL | C16_PLUS | * | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | C16_PLUS | * | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | C16_PLUS | * | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | C16_PLUS | * | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | D6_15 | * | * | 87.9258 | 85.7734 | 90.1891 | 52.9541 | 22380 | 3712 | 22421 | 2439 | 2392 | 98.0730 | |
| mlin-fermikit | INDEL | D6_15 | * | het | 90.4589 | 94.5825 | 86.6799 | 51.7766 | 10964 | 628 | 10952 | 1683 | 1653 | 98.2175 | |
| mlin-fermikit | INDEL | D6_15 | * | hetalt | 78.2531 | 64.4238 | 99.6427 | 35.0794 | 5266 | 2908 | 5298 | 19 | 18 | 94.7368 | |
| mlin-fermikit | INDEL | D6_15 | * | homalt | 93.1078 | 97.2178 | 89.3312 | 62.5603 | 6150 | 176 | 6171 | 737 | 721 | 97.8290 | |
| mlin-fermikit | INDEL | I16_PLUS | * | * | 82.9403 | 77.8109 | 88.7937 | 66.6528 | 4962 | 1415 | 4976 | 628 | 607 | 96.6561 | |
| mlin-fermikit | INDEL | I16_PLUS | * | het | 86.1646 | 90.3606 | 82.3411 | 68.6094 | 2456 | 262 | 2448 | 525 | 508 | 96.7619 | |
| mlin-fermikit | INDEL | I16_PLUS | * | hetalt | 66.4183 | 50.0953 | 98.5199 | 58.7247 | 1051 | 1047 | 1065 | 16 | 15 | 93.7500 | |
| mlin-fermikit | INDEL | I16_PLUS | * | homalt | 93.7946 | 93.2095 | 94.3871 | 67.1262 | 1455 | 106 | 1463 | 87 | 84 | 96.5517 | |
| mlin-fermikit | INDEL | C6_15 | * | * | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 7 | 0 | 0 | 0 | 0 | ||
| mlin-fermikit | INDEL | C6_15 | * | het | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 7 | 0 | 0 | 0 | 0 | ||
| mlin-fermikit | INDEL | C6_15 | * | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | C6_15 | * | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | D16_PLUS | * | * | 87.3801 | 85.9375 | 88.8720 | 69.7132 | 5830 | 954 | 5846 | 732 | 623 | 85.1093 | |
| mlin-fermikit | INDEL | D16_PLUS | * | het | 88.5250 | 92.6242 | 84.7733 | 71.4486 | 2926 | 233 | 2767 | 497 | 415 | 83.5010 | |
| mlin-fermikit | INDEL | D16_PLUS | * | hetalt | 79.5358 | 66.1148 | 99.7932 | 43.8033 | 1278 | 655 | 1448 | 3 | 2 | 66.6667 | |
| mlin-fermikit | INDEL | D16_PLUS | * | homalt | 91.6240 | 96.0993 | 87.5470 | 75.8209 | 1626 | 66 | 1631 | 232 | 206 | 88.7931 | |
| mlin-fermikit | INDEL | I1_5 | * | * | 96.5813 | 95.3758 | 97.8177 | 52.8217 | 143697 | 6967 | 143523 | 3202 | 3142 | 98.1262 | |
| mlin-fermikit | INDEL | I1_5 | * | het | 97.2425 | 97.2166 | 97.2684 | 53.2963 | 76841 | 2200 | 76701 | 2154 | 2108 | 97.8644 | |
| mlin-fermikit | INDEL | I1_5 | * | hetalt | 79.4455 | 66.1635 | 99.3997 | 62.4768 | 7407 | 3788 | 7451 | 45 | 45 | 100.0000 | |
| mlin-fermikit | INDEL | I1_5 | * | homalt | 98.3593 | 98.3799 | 98.3387 | 50.5872 | 59449 | 979 | 59371 | 1003 | 989 | 98.6042 | |
| mlin-fermikit | INDEL | C1_5 | * | * | 90.0000 | 100.0000 | 9 | 1 | 0 | 0 | 0 | ||||
| mlin-fermikit | INDEL | C1_5 | * | het | 0.0000 | 88.8889 | 0.0000 | 0.0000 | 8 | 1 | 0 | 0 | 0 | ||