PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
85701-85750 / 86044 show all | |||||||||||||||
| gduggal-snapplat | INDEL | D6_15 | * | * | 49.9163 | 35.9727 | 81.5114 | 64.7243 | 9386 | 16706 | 8068 | 1830 | 539 | 29.4536 | |
| gduggal-snapplat | INDEL | D6_15 | * | het | 45.6195 | 33.7388 | 70.4153 | 67.7429 | 3911 | 7681 | 3018 | 1268 | 180 | 14.1956 | |
| gduggal-snapplat | INDEL | D6_15 | * | hetalt | 51.3567 | 35.1358 | 95.3989 | 60.4943 | 2872 | 5302 | 2882 | 139 | 111 | 79.8561 | |
| gduggal-snapplat | INDEL | D6_15 | * | homalt | 55.1666 | 41.1476 | 83.6743 | 63.6351 | 2603 | 3723 | 2168 | 423 | 248 | 58.6288 | |
| gduggal-snapplat | INDEL | I16_PLUS | * | * | 0.0000 | 0.0157 | 0.0000 | 0.0000 | 1 | 6376 | 0 | 0 | 0 | ||
| gduggal-snapplat | INDEL | I16_PLUS | * | het | 0.0000 | 0.0000 | 0.0000 | 0 | 2718 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | I16_PLUS | * | hetalt | 0.0000 | 0.0477 | 0.0000 | 0.0000 | 1 | 2097 | 0 | 0 | 0 | ||
| gduggal-snapplat | INDEL | I16_PLUS | * | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1561 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | D1_5 | * | * | 84.8354 | 80.9636 | 89.0961 | 66.8161 | 118810 | 27935 | 139871 | 17118 | 4621 | 26.9950 | |
| gduggal-snapplat | INDEL | D1_5 | * | het | 85.0942 | 83.0201 | 87.2745 | 66.1285 | 72704 | 14870 | 86462 | 12607 | 2010 | 15.9435 | |
| gduggal-snapplat | INDEL | D1_5 | * | hetalt | 56.5026 | 42.2548 | 85.2469 | 84.6995 | 4329 | 5916 | 4403 | 762 | 572 | 75.0656 | |
| gduggal-snapplat | INDEL | D1_5 | * | homalt | 88.9829 | 85.3881 | 92.8936 | 64.0746 | 41777 | 7149 | 49006 | 3749 | 2039 | 54.3878 | |
| gduggal-snapplat | INDEL | C16_PLUS | * | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | C16_PLUS | * | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | C16_PLUS | * | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | C16_PLUS | * | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | C6_15 | * | * | 71.4286 | 100.0000 | 5 | 2 | 0 | 0 | 0 | ||||
| gduggal-snapplat | INDEL | C6_15 | * | het | 71.4286 | 100.0000 | 5 | 2 | 0 | 0 | 0 | ||||
| gduggal-snapplat | INDEL | C6_15 | * | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | C6_15 | * | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | D16_PLUS | * | * | 0.0000 | 0.0000 | 0.0000 | 0 | 6784 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | D16_PLUS | * | het | 0.0000 | 0.0000 | 0.0000 | 0 | 3159 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | D16_PLUS | * | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1933 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | D16_PLUS | * | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1692 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | C1_5 | * | * | 14.8148 | 40.0000 | 9.0909 | 92.7632 | 4 | 6 | 1 | 10 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | C1_5 | * | het | 0.0000 | 33.3333 | 0.0000 | 92.0354 | 3 | 6 | 0 | 9 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | C1_5 | * | hetalt | 100.0000 | 100.0000 | 1 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | INDEL | C1_5 | * | homalt | 0.0000 | 0.0000 | 50.0000 | 93.5484 | 0 | 0 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | C1_5 | * | * | 59.8991 | 90.0000 | 44.8865 | 88.9071 | 9 | 1 | 3125 | 3837 | 400 | 10.4248 | |
| gduggal-snapvard | INDEL | C1_5 | * | het | 54.5455 | 100.0000 | 37.5000 | 88.8932 | 9 | 0 | 2265 | 3775 | 369 | 9.7748 | |
| gduggal-snapvard | INDEL | C1_5 | * | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | C1_5 | * | homalt | 0.0000 | 0.0000 | 93.2755 | 88.9976 | 0 | 0 | 860 | 62 | 31 | 50.0000 | |
| gduggal-snapvard | INDEL | I6_15 | * | * | 50.7754 | 45.6827 | 57.1459 | 41.2412 | 11338 | 13481 | 13483 | 10111 | 8109 | 80.1998 | |
| gduggal-snapvard | INDEL | I6_15 | * | het | 64.9859 | 82.1571 | 53.7516 | 42.4853 | 8242 | 1790 | 11591 | 9973 | 7974 | 79.9559 | |
| gduggal-snapvard | INDEL | I6_15 | * | hetalt | 0.0000 | 15.6042 | 0.0000 | 0.0000 | 1334 | 7215 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I6_15 | * | homalt | 43.3535 | 28.2462 | 93.2020 | 23.7129 | 1762 | 4476 | 1892 | 138 | 135 | 97.8261 | |
| gduggal-snapvard | INDEL | I1_5 | * | * | 88.2138 | 87.9937 | 88.4349 | 55.6066 | 132574 | 18089 | 133297 | 17432 | 13523 | 77.5757 | |
| gduggal-snapvard | INDEL | I1_5 | * | het | 89.2130 | 96.8839 | 82.6678 | 61.9450 | 76578 | 2463 | 82223 | 17239 | 13345 | 77.4117 | |
| gduggal-snapvard | INDEL | I1_5 | * | hetalt | 0.0000 | 36.5106 | 0.0000 | 0.0000 | 4087 | 7107 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I1_5 | * | homalt | 92.2555 | 85.9022 | 99.6235 | 34.4127 | 51909 | 8519 | 51074 | 193 | 178 | 92.2280 | |
| gduggal-snapvard | INDEL | C6_15 | * | * | 51.3896 | 100.0000 | 34.5801 | 85.2457 | 7 | 0 | 490 | 927 | 158 | 17.0442 | |
| gduggal-snapvard | INDEL | C6_15 | * | het | 48.6270 | 100.0000 | 32.1240 | 84.8018 | 7 | 0 | 425 | 898 | 137 | 15.2561 | |
| gduggal-snapvard | INDEL | C6_15 | * | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | C6_15 | * | homalt | 0.0000 | 0.0000 | 69.1489 | 89.5439 | 0 | 0 | 65 | 29 | 21 | 72.4138 | |
| gduggal-snapvard | INDEL | D16_PLUS | * | * | 10.7850 | 6.2058 | 41.1492 | 71.3717 | 421 | 6363 | 444 | 635 | 373 | 58.7402 | |
| gduggal-snapvard | INDEL | D16_PLUS | * | het | 17.6734 | 11.3960 | 39.3474 | 71.0797 | 360 | 2799 | 410 | 632 | 372 | 58.8608 | |
| gduggal-snapvard | INDEL | D6_15 | * | * | 65.0191 | 61.1567 | 69.4022 | 48.8917 | 15957 | 10135 | 16034 | 7069 | 5706 | 80.7186 | |
| gduggal-snapvard | INDEL | D6_15 | * | het | 75.6496 | 85.7660 | 67.6679 | 49.6050 | 9942 | 1650 | 14418 | 6889 | 5530 | 80.2729 | |
| gduggal-snapvard | INDEL | D6_15 | * | hetalt | 0.0000 | 50.2569 | 0.0000 | 0.0000 | 4108 | 4066 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D6_15 | * | homalt | 45.1606 | 30.1454 | 89.9777 | 38.5773 | 1907 | 4419 | 1616 | 180 | 176 | 97.7778 | |