PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
8501-8550 / 86044 show all | |||||||||||||||
| asubramanian-gatk | INDEL | I1_5 | map_l250_m2_e1 | het | 82.2581 | 77.2727 | 87.9310 | 97.9454 | 51 | 15 | 51 | 7 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I1_5 | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.6014 | 2 | 0 | 2 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I1_5 | map_l250_m2_e1 | homalt | 95.4545 | 91.3043 | 100.0000 | 95.5789 | 42 | 4 | 42 | 0 | 0 | ||
| asubramanian-gatk | SNP | ti | map_l250_m2_e1 | * | 33.6335 | 20.2325 | 99.6120 | 98.2384 | 1027 | 4049 | 1027 | 4 | 1 | 25.0000 | |
| asubramanian-gatk | SNP | ti | map_l250_m2_e1 | het | 35.5489 | 21.6429 | 99.4429 | 98.4616 | 714 | 2585 | 714 | 4 | 1 | 25.0000 | |
| asubramanian-gatk | SNP | ti | map_l250_m2_e1 | hetalt | 33.3333 | 20.0000 | 100.0000 | 97.5000 | 1 | 4 | 1 | 0 | 0 | ||
| asubramanian-gatk | SNP | ti | map_l250_m2_e1 | homalt | 29.9424 | 17.6072 | 100.0000 | 97.3595 | 312 | 1460 | 312 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | map_l250_m2_e1 | * | 92.6829 | 86.3636 | 100.0000 | 97.5093 | 19 | 3 | 20 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | map_l250_m2_e1 | het | 96.2963 | 92.8571 | 100.0000 | 97.7625 | 13 | 1 | 13 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | map_l250_m2_e1 | hetalt | 66.6667 | 50.0000 | 100.0000 | 96.9231 | 1 | 1 | 2 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | map_l250_m2_e1 | homalt | 90.9091 | 83.3333 | 100.0000 | 96.8153 | 5 | 1 | 5 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I16_PLUS | map_l250_m2_e1 | * | 0.0000 | 0.0000 | 99.6000 | 0 | 1 | 0 | 1 | 0 | 0.0000 | ||
| asubramanian-gatk | SNP | * | map_l250_m2_e1 | * | 32.0765 | 19.1186 | 99.5437 | 98.3572 | 1527 | 6460 | 1527 | 7 | 1 | 14.2857 | |
| asubramanian-gatk | SNP | * | map_l250_m2_e1 | het | 34.0104 | 20.5167 | 99.3560 | 98.5506 | 1080 | 4184 | 1080 | 7 | 1 | 14.2857 | |
| asubramanian-gatk | SNP | * | map_l250_m2_e1 | hetalt | 33.3333 | 20.0000 | 100.0000 | 98.5915 | 1 | 4 | 1 | 0 | 0 | ||
| asubramanian-gatk | SNP | * | map_l250_m2_e1 | homalt | 28.1922 | 16.4091 | 100.0000 | 97.5636 | 446 | 2272 | 446 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D1_5 | map_l250_m2_e1 | * | 86.6485 | 85.9459 | 87.3626 | 96.7337 | 159 | 26 | 159 | 23 | 2 | 8.6957 | |
| asubramanian-gatk | INDEL | D1_5 | map_l250_m2_e1 | het | 84.3373 | 86.0656 | 82.6772 | 96.9962 | 105 | 17 | 105 | 22 | 2 | 9.0909 | |
| asubramanian-gatk | INDEL | D1_5 | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.1707 | 3 | 0 | 3 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D1_5 | map_l250_m2_e1 | homalt | 91.0714 | 85.0000 | 98.0769 | 95.5932 | 51 | 9 | 51 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | SNP | tv | map_l250_m2_e1 | * | 29.3068 | 17.1811 | 99.6024 | 98.5560 | 501 | 2415 | 501 | 2 | 0 | 0.0000 | |
| asubramanian-gatk | SNP | tv | map_l250_m2_e1 | het | 31.3759 | 18.6260 | 99.4565 | 98.6990 | 366 | 1599 | 366 | 2 | 0 | 0.0000 | |
| asubramanian-gatk | SNP | tv | map_l250_m2_e1 | hetalt | 33.3333 | 20.0000 | 100.0000 | 98.5915 | 1 | 4 | 1 | 0 | 0 | ||
| asubramanian-gatk | SNP | tv | map_l250_m2_e1 | homalt | 24.8148 | 14.1649 | 100.0000 | 97.9315 | 134 | 812 | 134 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I6_15 | map_l250_m2_e1 | * | 71.4286 | 62.5000 | 83.3333 | 98.4127 | 5 | 3 | 5 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I6_15 | map_l250_m2_e1 | het | 80.0000 | 80.0000 | 80.0000 | 98.0315 | 4 | 1 | 4 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I6_15 | map_l250_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| asubramanian-gatk | INDEL | I6_15 | map_l250_m2_e1 | homalt | 50.0000 | 33.3333 | 100.0000 | 99.0099 | 1 | 2 | 1 | 0 | 0 | ||
| anovak-vg | INDEL | C1_5 | map_l250_m2_e1 | * | 0.0000 | 0.0000 | 50.0000 | 98.4615 | 0 | 0 | 1 | 1 | 0 | 0.0000 | |
| anovak-vg | INDEL | C1_5 | map_l250_m2_e1 | het | 0.0000 | 0.0000 | 50.0000 | 98.3333 | 0 | 0 | 1 | 1 | 0 | 0.0000 | |
| anovak-vg | INDEL | C1_5 | map_l250_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | C1_5 | map_l250_m2_e1 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| anovak-vg | INDEL | D1_5 | map_l250_m2_e1 | * | 72.7100 | 74.5946 | 70.9184 | 96.2235 | 138 | 47 | 139 | 57 | 24 | 42.1053 | |
| anovak-vg | INDEL | D1_5 | map_l250_m2_e1 | het | 72.2986 | 81.1475 | 65.1899 | 96.1529 | 99 | 23 | 103 | 55 | 22 | 40.0000 | |
| anovak-vg | INDEL | D1_5 | map_l250_m2_e1 | hetalt | 0.0000 | 66.6667 | 0.0000 | 0.0000 | 2 | 1 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D1_5 | map_l250_m2_e1 | homalt | 74.7056 | 61.6667 | 94.7368 | 96.4912 | 37 | 23 | 36 | 2 | 2 | 100.0000 | |
| anovak-vg | INDEL | C16_PLUS | map_l250_m2_e1 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | C16_PLUS | map_l250_m2_e1 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | C16_PLUS | map_l250_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | C16_PLUS | map_l250_m2_e1 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | D16_PLUS | map_l250_m2_e1 | * | 66.6667 | 60.0000 | 75.0000 | 96.6387 | 3 | 2 | 3 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | D16_PLUS | map_l250_m2_e1 | het | 66.6667 | 66.6667 | 66.6667 | 96.3415 | 2 | 1 | 2 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | D16_PLUS | map_l250_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | D16_PLUS | map_l250_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.2973 | 1 | 0 | 1 | 0 | 0 | ||
| anovak-vg | INDEL | * | map_l250_m2_e1 | * | 67.7462 | 69.9700 | 65.6593 | 96.4861 | 233 | 100 | 239 | 125 | 63 | 50.4000 | |
| anovak-vg | INDEL | * | map_l250_m2_e1 | het | 65.6155 | 68.2464 | 63.1799 | 96.7945 | 144 | 67 | 151 | 88 | 29 | 32.9545 | |
| anovak-vg | INDEL | * | map_l250_m2_e1 | hetalt | 0.0000 | 33.3333 | 0.0000 | 0.0000 | 2 | 4 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | * | map_l250_m2_e1 | homalt | 72.6272 | 75.0000 | 70.4000 | 95.6911 | 87 | 29 | 88 | 37 | 34 | 91.8919 | |
| anovak-vg | INDEL | D6_15 | map_l250_m2_e1 | * | 78.6127 | 77.2727 | 80.0000 | 96.4413 | 17 | 5 | 16 | 4 | 3 | 75.0000 | |
| anovak-vg | INDEL | D6_15 | map_l250_m2_e1 | het | 77.7385 | 78.5714 | 76.9231 | 97.0455 | 11 | 3 | 10 | 3 | 2 | 66.6667 | |