PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
85201-85250 / 86044 show all | |||||||||||||||
| gduggal-bwavard | INDEL | D16_PLUS | * | * | 63.4968 | 61.3502 | 65.7990 | 69.3353 | 4162 | 2622 | 4171 | 2168 | 1906 | 87.9151 | |
| gduggal-bwavard | INDEL | D16_PLUS | * | het | 72.3037 | 95.0301 | 58.3494 | 71.4553 | 3002 | 157 | 3026 | 2160 | 1899 | 87.9167 | |
| gduggal-bwavard | INDEL | D16_PLUS | * | hetalt | 0.0000 | 0.3104 | 0.0000 | 0.0000 | 6 | 1927 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D16_PLUS | * | homalt | 80.8672 | 68.2033 | 99.3062 | 53.9537 | 1154 | 538 | 1145 | 8 | 7 | 87.5000 | |
| gduggal-bwavard | INDEL | D1_5 | * | * | 90.6910 | 89.3918 | 92.0286 | 58.1851 | 131178 | 15567 | 129649 | 11230 | 9891 | 88.0766 | |
| gduggal-bwavard | INDEL | D1_5 | * | het | 93.4417 | 99.0111 | 88.4655 | 62.3753 | 86708 | 866 | 85823 | 11190 | 9864 | 88.1501 | |
| gduggal-bwavard | INDEL | D1_5 | * | hetalt | 0.0000 | 0.3904 | 0.0000 | 0.0000 | 40 | 10205 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | * | homalt | 95.1427 | 90.8106 | 99.9088 | 44.5205 | 44430 | 4496 | 43826 | 40 | 27 | 67.5000 | |
| gduggal-bwavard | INDEL | C6_15 | * | * | 79.7527 | 100.0000 | 66.3239 | 94.4109 | 7 | 0 | 258 | 131 | 32 | 24.4275 | |
| gduggal-bwavard | INDEL | C6_15 | * | het | 73.0769 | 100.0000 | 57.5758 | 94.9772 | 7 | 0 | 171 | 126 | 30 | 23.8095 | |
| gduggal-bwavard | INDEL | C6_15 | * | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | C6_15 | * | homalt | 0.0000 | 0.0000 | 94.5652 | 91.2130 | 0 | 0 | 87 | 5 | 2 | 40.0000 | |
| gduggal-bwavard | INDEL | I1_5 | * | * | 89.8158 | 87.7423 | 91.9898 | 54.5219 | 132196 | 18468 | 131206 | 11425 | 10755 | 94.1357 | |
| gduggal-bwavard | INDEL | I1_5 | * | het | 92.1214 | 97.7872 | 87.0762 | 61.9735 | 77292 | 1749 | 76863 | 11408 | 10744 | 94.1795 | |
| gduggal-bwavard | INDEL | I1_5 | * | hetalt | 0.0000 | 0.5181 | 0.0000 | 0.0000 | 58 | 11137 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I1_5 | * | homalt | 95.1435 | 90.7626 | 99.9687 | 33.2973 | 54846 | 5582 | 54343 | 17 | 11 | 64.7059 | |
| gduggal-bwavard | INDEL | D6_15 | * | * | 62.6145 | 59.4780 | 66.1003 | 55.5649 | 15519 | 10573 | 15367 | 7881 | 7658 | 97.1704 | |
| gduggal-bwavard | INDEL | D6_15 | * | het | 73.6436 | 98.1194 | 58.9409 | 57.7838 | 11374 | 218 | 11286 | 7862 | 7644 | 97.2272 | |
| gduggal-bwavard | INDEL | D6_15 | * | hetalt | 0.0000 | 0.2691 | 0.0000 | 0.0000 | 22 | 8152 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D6_15 | * | homalt | 78.7719 | 65.1755 | 99.5366 | 41.1089 | 4123 | 2203 | 4081 | 19 | 14 | 73.6842 | |
| gduggal-bwavard | SNP | ti | * | * | 99.3434 | 99.0343 | 99.6545 | 21.4644 | 2065379 | 20139 | 2057255 | 7133 | 2188 | 30.6743 | |
| gduggal-bwavard | SNP | ti | * | het | 99.2556 | 99.0550 | 99.4571 | 24.6552 | 1269783 | 12114 | 1265789 | 6910 | 2002 | 28.9725 | |
| gduggal-bwavard | SNP | ti | * | hetalt | 0.0000 | 1.0309 | 0.0000 | 0.0000 | 6 | 576 | 0 | 0 | 0 | ||
| gduggal-bwavard | SNP | ti | * | homalt | 99.5201 | 99.0724 | 99.9718 | 15.7269 | 795590 | 7449 | 791466 | 223 | 186 | 83.4081 | |
| gduggal-snapfb | INDEL | D16_PLUS | * | * | 0.1179 | 0.0590 | 100.0000 | 0.0000 | 4 | 6780 | 1 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D16_PLUS | * | het | 0.1898 | 0.0950 | 100.0000 | 0.0000 | 3 | 3156 | 1 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D16_PLUS | * | hetalt | 0.0000 | 0.0517 | 0.0000 | 0.0000 | 1 | 1932 | 0 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D16_PLUS | * | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1692 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | C6_15 | * | * | 71.8894 | 85.7143 | 61.9048 | 96.2298 | 6 | 1 | 13 | 8 | 5 | 62.5000 | |
| gduggal-snapfb | INDEL | C6_15 | * | het | 75.0000 | 85.7143 | 66.6667 | 94.0945 | 6 | 1 | 10 | 5 | 3 | 60.0000 | |
| gduggal-snapfb | INDEL | C6_15 | * | hetalt | 0.0000 | 0.0000 | 50.0000 | 98.0000 | 0 | 0 | 2 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | INDEL | C6_15 | * | homalt | 0.0000 | 0.0000 | 50.0000 | 98.0583 | 0 | 0 | 1 | 1 | 0 | 0.0000 | |
| gduggal-bwavard | SNP | * | * | * | 99.3249 | 99.0431 | 99.6083 | 22.9016 | 3025405 | 29229 | 3004827 | 11817 | 3477 | 29.4237 | |
| gduggal-bwavard | SNP | * | * | het | 99.2301 | 99.0784 | 99.3822 | 26.2938 | 1856334 | 17267 | 1845056 | 11469 | 3208 | 27.9711 | |
| gduggal-bwavard | SNP | * | * | hetalt | 0.0000 | 0.6889 | 0.0000 | 0.0000 | 6 | 865 | 0 | 0 | 0 | ||
| gduggal-bwavard | SNP | * | * | homalt | 99.5128 | 99.0597 | 99.9700 | 16.7717 | 1169065 | 11097 | 1159771 | 348 | 269 | 77.2989 | |
| gduggal-snapfb | INDEL | C16_PLUS | * | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | C16_PLUS | * | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | C16_PLUS | * | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | C16_PLUS | * | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | C1_5 | * | * | 35.4772 | 90.0000 | 22.0930 | 85.2234 | 9 | 1 | 19 | 67 | 6 | 8.9552 | |
| gduggal-snapfb | INDEL | C1_5 | * | het | 41.5584 | 88.8889 | 27.1186 | 82.3353 | 8 | 1 | 16 | 43 | 3 | 6.9767 | |
| gduggal-snapfb | INDEL | C1_5 | * | hetalt | 22.2222 | 100.0000 | 12.5000 | 85.4545 | 1 | 0 | 1 | 7 | 2 | 28.5714 | |
| gduggal-snapfb | INDEL | C1_5 | * | homalt | 0.0000 | 0.0000 | 10.5263 | 90.1554 | 0 | 0 | 2 | 17 | 1 | 5.8824 | |
| gduggal-bwavard | SNP | tv | * | * | 99.2324 | 99.0032 | 99.4627 | 26.1679 | 960032 | 9666 | 955309 | 5161 | 1540 | 29.8392 | |
| gduggal-bwavard | SNP | tv | * | het | 99.1377 | 99.1291 | 99.1462 | 30.0519 | 586551 | 5153 | 584089 | 5030 | 1454 | 28.9066 | |
| gduggal-bwavard | SNP | tv | * | hetalt | 0.0000 | 0.6889 | 0.0000 | 0.0000 | 6 | 865 | 0 | 0 | 0 | ||
| gduggal-bwavard | SNP | tv | * | homalt | 99.4965 | 99.0327 | 99.9647 | 19.0358 | 373475 | 3648 | 371220 | 131 | 86 | 65.6489 | |
| gduggal-snapfb | INDEL | * | * | * | 92.2602 | 90.5733 | 94.0112 | 57.2799 | 312063 | 32479 | 322983 | 20575 | 9778 | 47.5237 | |
| gduggal-snapfb | INDEL | * | * | het | 92.8434 | 92.0858 | 93.6136 | 55.1298 | 178769 | 15364 | 200114 | 13652 | 5023 | 36.7931 | |