PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1696 1697 1698 1699 1700 1701 1702 1703 1704 ... 1720 1721 » 84951-85000 / 86044 show all
cchapple-custom	INDEL	D16_PLUS	*	hetalt	0.0000	90.8432	0.0000	0.0000	1756	177	0	0	0
cchapple-custom	INDEL	D16_PLUS	*	homalt	98.3125	98.3452	98.2800	59.3539	1664	28	1657	29	25	86.2069
cchapple-custom	SNP	*	*	*	99.8448	99.8832	99.8063	20.8246	3051052	3567	3049557	5917	726	12.2697
cchapple-custom	SNP	*	*	het	99.7822	99.8765	99.6880	23.4490	1871274	2313	1871921	5859	675	11.5207
cchapple-custom	SNP	*	*	hetalt	0.0000	99.6556	0.0000	0.0000	868	3	0	0	0
cchapple-custom	SNP	*	*	homalt	99.9445	99.8940	99.9951	16.2464	1178910	1251	1177636	58	51	87.9310
cchapple-custom	INDEL	D6_15	*	*	97.8623	97.1869	98.5472	48.1960	25358	734	26658	393	348	88.5496
cchapple-custom	INDEL	D6_15	*	het	98.5018	98.2488	98.7561	48.6146	11389	203	20403	257	215	83.6576
cchapple-custom	INDEL	D6_15	*	hetalt	0.0000	93.7852	0.0000	0.0000	7666	508	0	0	0
cchapple-custom	INDEL	D6_15	*	homalt	98.7463	99.6364	97.8720	46.7949	6303	23	6255	136	133	97.7941
cchapple-custom	INDEL	I1_5	*	*	99.2924	98.8889	99.6992	56.2734	148990	1674	149480	451	355	78.7140
cchapple-custom	INDEL	I1_5	*	het	99.2835	98.8171	99.7543	58.7353	78106	935	89725	221	127	57.4661
cchapple-custom	INDEL	I1_5	*	hetalt	0.0000	94.3993	0.0000	0.0000	10568	627	0	0	0
cchapple-custom	INDEL	I1_5	*	homalt	99.7155	99.8147	99.6166	51.9774	60316	112	59755	230	228	99.1304
cchapple-custom	INDEL	I6_15	*	*	97.7435	96.8215	98.6833	49.3635	24034	789	25632	342	305	89.1813
cchapple-custom	INDEL	I6_15	*	het	98.6365	97.9268	99.3566	49.5505	9825	208	19457	126	91	72.2222
cchapple-custom	INDEL	I6_15	*	hetalt	0.0000	93.4978	0.0000	0.0000	7995	556	0	0	0
cchapple-custom	INDEL	I6_15	*	homalt	98.0872	99.5993	96.6202	48.7819	6214	25	6175	216	214	99.0741
cchapple-custom	INDEL	D1_5	*	*	99.4223	99.1584	99.6877	55.8052	145510	1235	145535	456	300	65.7895
cchapple-custom	INDEL	D1_5	*	het	99.5112	99.3229	99.7003	54.7900	86981	593	97146	292	149	51.0274
cchapple-custom	INDEL	D1_5	*	hetalt	0.0000	94.5046	0.0000	0.0000	9682	563	0	0	0
cchapple-custom	INDEL	D1_5	*	homalt	99.7503	99.8385	99.6622	57.7109	48847	79	48389	164	151	92.0732
ckim-dragen	SNP	tv	*	*	99.8136	99.9495	99.6782	25.0811	969200	490	969499	3130	164	5.2396
ckim-dragen	SNP	tv	*	het	99.7113	99.9417	99.4820	27.9772	591351	345	591544	3080	126	4.0909
ckim-dragen	SNP	tv	*	hetalt	99.3162	99.7704	98.8662	49.3103	869	2	872	10	9	90.0000
ckim-dragen	SNP	tv	*	homalt	99.9757	99.9621	99.9894	19.9141	376980	143	377083	40	29	72.5000
ckim-dragen	INDEL	I6_15	*	*	97.2249	96.4630	97.9990	52.8733	23945	878	23949	489	448	91.6155
ckim-dragen	INDEL	I6_15	*	het	98.9990	98.7043	99.2956	59.4838	9903	130	9867	70	31	44.2857
ckim-dragen	INDEL	I6_15	*	hetalt	95.5238	91.4630	99.9619	38.0544	7821	730	7861	3	3	100.0000
ckim-dragen	INDEL	I6_15	*	homalt	96.6294	99.7115	93.7321	54.6498	6221	18	6221	416	414	99.5192
ckim-dragen	SNP	*	*	*	99.8268	99.9524	99.7015	21.8489	3053166	1453	3053731	9143	533	5.8296
ckim-dragen	SNP	*	*	het	99.7355	99.9519	99.5199	24.5349	1872686	901	1873038	9035	444	4.9142
ckim-dragen	SNP	*	*	hetalt	99.3162	99.7704	98.8662	49.3103	869	2	872	10	9	90.0000
ckim-dragen	SNP	*	*	homalt	99.9725	99.9534	99.9917	17.1093	1179611	550	1179821	98	80	81.6327
ckim-gatk	INDEL	C16_PLUS	*	*		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-gatk	INDEL	C16_PLUS	*	het		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-gatk	INDEL	C16_PLUS	*	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-gatk	INDEL	C16_PLUS	*	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-gatk	INDEL	C1_5	*	*	0.0000	90.0000	0.0000	0.0000	9	1	0	0	0
ckim-gatk	INDEL	C1_5	*	het	0.0000	88.8889	0.0000	0.0000	8	1	0	0	0
ckim-gatk	INDEL	C1_5	*	hetalt	0.0000	100.0000	0.0000	0.0000	1	0	0	0	0
ckim-gatk	INDEL	C1_5	*	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-gatk	INDEL	*	*	*	99.2271	99.1551	99.2992	60.7185	341631	2911	341492	2410	1553	64.4398
ckim-gatk	INDEL	*	*	het	99.4669	99.6616	99.2730	62.2737	193476	657	193095	1414	578	40.8769
ckim-gatk	INDEL	*	*	hetalt	95.5159	91.6749	99.6928	55.9040	23136	2101	23365	72	70	97.2222
ckim-gatk	INDEL	*	*	homalt	99.5712	99.8778	99.2664	58.9388	125019	153	125032	924	905	97.9437
ckim-gatk	INDEL	C6_15	*	*	0.0000	100.0000	0.0000	0.0000	7	0	0	0	0
ckim-gatk	INDEL	C6_15	*	het	0.0000	100.0000	0.0000	0.0000	7	0	0	0	0
ckim-gatk	INDEL	C6_15	*	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-gatk	INDEL	C6_15	*	homalt		0.0000	0.0000	0.0000	0	0	0	0	0

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge