PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Challenge Closed
View Responses
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Reset
EntryTypeSubtypeSubset GenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
84851-84900 / 86044 show all
eyeh-varpipeINDELI6_15*hetalt
42.6506
27.4354
95.7540
48.5714
234662052413107106
99.0654
eyeh-varpipeINDELI6_15*homalt
77.6886
84.0359
72.2329
34.4939
5243996527320272012
99.2600
eyeh-varpipeINDELI16_PLUS**
50.2841
36.9610
78.6262
37.5078
235740202358641639
99.6880
eyeh-varpipeINDELI16_PLUS*het
50.8662
38.8889
73.5049
38.7042
105716611057381381
100.0000
eyeh-varpipeINDELI16_PLUS*hetalt
18.8152
10.4862
91.4634
56.9177
22018782252121
100.0000
eyeh-varpipeINDELI16_PLUS*homalt
74.9769
69.1864
81.8251
30.1275
10804811076239237
99.1632
eyeh-varpipeINDELD16_PLUS**
59.3408
53.1250
67.2039
51.2916
36043180358617501709
97.6571
eyeh-varpipeINDELD16_PLUS*het
74.8225
76.6382
73.0908
51.0116
24217382230821811
98.7820
eyeh-varpipeINDELD16_PLUS*hetalt
28.3581
16.7098
93.6210
67.5396
32316104993433
97.0588
eyeh-varpipeINDELD16_PLUS*homalt
49.8532
50.8274
48.9155
43.2091
860832857895865
96.6480
eyeh-varpipeINDELD1_5**
95.6258
94.7617
96.5059
56.5047
139058768713903850344747
94.2988
eyeh-varpipeINDELD1_5*het
98.8729
98.5350
99.2132
51.9513
86291128385238676474
70.1183
eyeh-varpipeINDELD1_5*hetalt
58.3169
41.7179
96.8535
76.3736
427459715356174162
93.1034
eyeh-varpipeINDELD1_5*homalt
95.4519
99.1150
92.0499
59.2107
484934334844441844111
98.2553
eyeh-varpipeINDELC6_15**
89.4022
100.0000
80.8354
93.6057
703297851
65.3846
eyeh-varpipeINDELC6_15*het
97.0297
100.0000
94.2308
93.5108
7014795
55.5556
eyeh-varpipeINDELC6_15*hetalt
0.0000
0.0000
83.6538
94.4474
00871713
76.4706
eyeh-varpipeINDELC6_15*homalt
0.0000
0.0000
64.6259
92.9598
00955233
63.4615
eyeh-varpipeINDELI1_5**
94.9923
93.5665
96.4622
53.4954
140971969314110351754944
95.5362
eyeh-varpipeINDELI1_5*het
97.6534
97.4342
97.8735
52.4121
7701320287690916711507
90.1855
eyeh-varpipeINDELI1_5*hetalt
60.5783
43.9661
97.3679
73.2444
492262735216141132
93.6170
eyeh-varpipeINDELI1_5*homalt
96.1261
97.6964
94.6055
51.8219
5903613925897833633305
98.2753
eyeh-varpipeINDELD6_15**
75.4633
71.7500
79.5820
47.2482
1872173711865847874643
96.9919
eyeh-varpipeINDELD6_15*het
91.9882
92.1325
91.8444
46.7075
1068091210079895860
96.0894
eyeh-varpipeINDELD6_15*hetalt
46.3037
30.5358
95.7427
56.1168
249656783036135128
94.8148
eyeh-varpipeINDELD6_15*homalt
70.9562
87.6541
59.6022
44.0635
5545781554337573655
97.2851
dgrover-gatkINDELI6_15**
97.9082
97.2888
98.5355
53.2809
2415067324155359329
91.6435
dgrover-gatkINDELI6_15*het
99.0704
98.9435
99.1977
59.7099
992710698918053
66.2500
dgrover-gatkINDELI6_15*hetalt
96.6039
93.4744
99.9502
38.7907
7993558803444
100.0000
dgrover-gatkINDELI6_15*homalt
97.7715
99.8557
95.7725
55.4177
623096230275272
98.9091
dgrover-gatkSNPtv**
99.9211
99.9611
99.8812
22.3092
969313377969227115381
7.0252
dgrover-gatkSNPtv*het
99.8830
99.9556
99.8105
23.6829
591433263591362112357
5.0757
dgrover-gatkSNPtv*hetalt
99.8275
99.6556
100.0000
41.6667
868386800
dgrover-gatkSNPtv*homalt
99.9813
99.9706
99.9920
19.9848
3770121113769973024
80.0000
dgrover-gatkSNPti**
99.9570
99.9639
99.9500
17.7617
208475975220846961042126
12.0921
dgrover-gatkSNPti*het
99.9394
99.9568
99.9221
18.8587
1281337554128128399987
8.7087
dgrover-gatkSNPti*hetalt
99.8279
99.6564
100.0000
41.2361
580258000
dgrover-gatkSNPti*homalt
99.9851
99.9756
99.9946
15.9219
8028421968028334339
90.6977
dgrover-gatkINDELD1_5**
99.6144
99.5271
99.7018
60.8244
146051694146107437317
72.5400
dgrover-gatkINDELD1_5*het
99.7614
99.7979
99.7250
59.4296
8739717787406241125
51.8672
dgrover-gatkINDELD1_5*hetalt
97.3217
95.1977
99.5427
63.5299
975349297954543
95.5556
dgrover-gatkINDELD1_5*homalt
99.8204
99.9489
99.6922
62.5668
489012548906151149
98.6755
dgrover-gatkINDELD6_15**
98.3523
98.1412
98.5642
55.1444
2560748525606373340
91.1528
dgrover-gatkINDELD6_15*het
98.8856
99.4565
98.3212
62.9800
115296311479196167
85.2041
dgrover-gatkINDELD6_15*hetalt
97.1534
94.9352
99.4777
33.7944
776041478094139
95.1220
dgrover-gatkINDELD6_15*homalt
98.8732
99.8735
97.8928
55.5601
631886318136134
98.5294
dgrover-gatkINDELI1_5**
99.5294
99.3841
99.6753
59.0782
149736928149786488385
78.8934
dgrover-gatkINDELI1_5*het
99.6919
99.6799
99.7038
61.0342
7878825378770234135
57.6923
dgrover-gatkINDELI1_5*hetalt
97.2805
94.7387
99.9625
62.4322
106065891066944
100.0000
dgrover-gatkINDELI1_5*homalt
99.7224
99.8577
99.5874
55.4630
603428660347250246
98.4000