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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1691 1692 1693 1694 1695 1696 1697 1698 1699 ... 1720 1721 » 84701-84750 / 86044 show all
astatham-gatk	INDEL	I6_15	*	*	97.8089	97.1035	98.5247	52.8353	24104	719	24109	361	337	93.3518
astatham-gatk	INDEL	I6_15	*	het	98.9793	98.7242	99.2358	59.2368	9905	128	9869	76	54	71.0526
astatham-gatk	INDEL	I6_15	*	hetalt	96.4480	93.1938	99.9376	38.5683	7969	582	8010	5	5	100.0000
astatham-gatk	INDEL	I6_15	*	homalt	97.7332	99.8557	95.6989	54.9107	6230	9	6230	280	278	99.2857
astatham-gatk	INDEL	D1_5	*	het	99.6974	99.6803	99.7145	58.9760	87294	280	87301	250	122	48.8000
astatham-gatk	INDEL	D1_5	*	hetalt	97.2343	95.0220	99.5520	63.2355	9735	510	9778	44	43	97.7273
astatham-gatk	INDEL	D1_5	*	homalt	99.8143	99.9448	99.6841	62.4034	48899	27	48904	155	152	98.0645
astatham-gatk	INDEL	D6_15	*	*	98.2985	98.0875	98.5103	54.9898	25593	499	25592	387	347	89.6641
astatham-gatk	INDEL	D6_15	*	het	98.7915	99.4048	98.1857	62.8008	11523	69	11473	212	175	82.5472
astatham-gatk	INDEL	D6_15	*	hetalt	97.1014	94.8251	99.4898	33.5762	7751	423	7800	40	39	97.5000
astatham-gatk	INDEL	D6_15	*	homalt	98.8889	99.8893	97.9083	55.4989	6319	7	6319	135	133	98.5185
astatham-gatk	SNP	*	*	*	99.5934	99.2091	99.9807	19.0428	3030461	24158	3030315	584	162	27.7397
astatham-gatk	SNP	*	*	het	99.3521	98.7393	99.9725	20.1637	1849967	23620	1849845	508	95	18.7008
astatham-gatk	SNP	*	*	hetalt	99.7699	99.5408	100.0000	40.6164	867	4	867	0	0
astatham-gatk	SNP	*	*	homalt	99.9742	99.9548	99.9936	17.1971	1179627	534	1179603	76	67	88.1579
astatham-gatk	INDEL	D16_PLUS	*	*	97.8775	98.0100	97.7454	70.7802	6649	135	6633	153	104	67.9739
astatham-gatk	INDEL	D16_PLUS	*	het	97.7337	99.3036	96.2126	78.4600	3137	22	2896	114	70	61.4035
astatham-gatk	INDEL	D16_PLUS	*	hetalt	96.8051	94.4128	99.3217	38.8807	1825	108	2050	14	14	100.0000
astatham-gatk	INDEL	D16_PLUS	*	homalt	99.1187	99.7045	98.5397	70.8497	1687	5	1687	25	20	80.0000
astatham-gatk	INDEL	D1_5	*	*	99.5682	99.4433	99.6934	60.4898	145928	817	145983	449	317	70.6013
dgrover-gatk	INDEL	C16_PLUS	*	*		0.0000	0.0000	0.0000	0	0	0	0	0
dgrover-gatk	INDEL	C16_PLUS	*	het		0.0000	0.0000	0.0000	0	0	0	0	0
dgrover-gatk	INDEL	C16_PLUS	*	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
dgrover-gatk	INDEL	C16_PLUS	*	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-vqsr	SNP	*	*	*	99.2866	98.6511	99.9303	23.6837	3013415	41204	3013272	2101	144	6.8539
ckim-vqsr	SNP	*	*	het	99.4736	99.0611	99.8894	26.9578	1855996	17591	1855876	2054	101	4.9172
ckim-vqsr	SNP	*	*	hetalt	97.4148	95.1780	99.7593	54.6645	829	42	829	2	2	100.0000
ckim-vqsr	SNP	*	*	homalt	98.9894	98.0027	99.9961	17.7187	1156590	23571	1156567	45	41	91.1111
ckim-vqsr	SNP	ti	*	*	99.3455	98.7474	99.9510	21.8102	2059387	26124	2059330	1009	89	8.8206
ckim-vqsr	SNP	ti	*	het	99.5238	99.1280	99.9229	24.8520	1270713	11178	1270665	981	62	6.3201
ckim-vqsr	SNP	ti	*	hetalt	97.3638	95.1890	99.6403	53.2773	554	28	554	2	2	100.0000
ckim-vqsr	SNP	ti	*	homalt	99.0608	98.1423	99.9967	16.3042	788120	14918	788111	26	25	96.1538
dgrover-gatk	INDEL	C1_5	*	*	0.0000	90.0000	0.0000	0.0000	9	1	0	0	0
dgrover-gatk	INDEL	C1_5	*	het	0.0000	88.8889	0.0000	0.0000	8	1	0	0	0
dgrover-gatk	INDEL	C1_5	*	hetalt	0.0000	100.0000	0.0000	0.0000	1	0	0	0	0
dgrover-gatk	INDEL	C1_5	*	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
dgrover-gatk	INDEL	C6_15	*	*	0.0000	100.0000	0.0000	0.0000	7	0	0	0	0
dgrover-gatk	INDEL	C6_15	*	het	0.0000	100.0000	0.0000	0.0000	7	0	0	0	0
dgrover-gatk	INDEL	C6_15	*	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
dgrover-gatk	INDEL	C6_15	*	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
dgrover-gatk	INDEL	*	*	*	99.4009	99.3458	99.4561	60.2776	342288	2254	342154	1871	1513	80.8658
dgrover-gatk	INDEL	*	*	het	99.5990	99.6559	99.5422	61.2168	193465	668	193091	888	555	62.5000
dgrover-gatk	INDEL	*	*	hetalt	96.9073	94.2584	99.7094	58.4640	23788	1449	24018	70	68	97.1429
dgrover-gatk	INDEL	*	*	homalt	99.5819	99.8906	99.2752	59.0938	125035	137	125045	913	890	97.4808
dgrover-gatk	INDEL	D16_PLUS	*	*	97.8781	98.0395	97.7172	70.6733	6651	133	6635	155	103	66.4516
dgrover-gatk	INDEL	D16_PLUS	*	het	97.8168	99.3036	96.3739	78.4222	3137	22	2897	109	66	60.5505
dgrover-gatk	INDEL	D16_PLUS	*	hetalt	96.8869	94.5680	99.3224	39.0920	1828	105	2052	14	14	100.0000
dgrover-gatk	INDEL	D16_PLUS	*	homalt	98.8856	99.6454	98.1374	70.5317	1686	6	1686	32	23	71.8750
ckim-vqsr	SNP	tv	*	*	99.1585	98.4420	99.8855	27.4583	954582	15108	954496	1094	57	5.2102
ckim-vqsr	SNP	tv	*	het	99.3645	98.9162	99.8170	31.1430	585283	6413	585211	1073	39	3.6347

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