PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
84601-84650 / 86044 show all | |||||||||||||||
| bgallagher-sentieon | INDEL | C16_PLUS | * | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | C16_PLUS | * | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | C16_PLUS | * | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | C16_PLUS | * | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | D6_15 | * | * | 98.0100 | 97.7771 | 98.2439 | 54.8211 | 25512 | 580 | 25511 | 456 | 416 | 91.2281 | |
| bgallagher-sentieon | INDEL | D6_15 | * | het | 98.7535 | 99.4306 | 98.0855 | 62.6961 | 11526 | 66 | 11476 | 224 | 188 | 83.9286 | |
| bgallagher-sentieon | INDEL | D6_15 | * | hetalt | 96.5632 | 93.7974 | 99.4971 | 32.7057 | 7667 | 507 | 7716 | 39 | 38 | 97.4359 | |
| bgallagher-sentieon | INDEL | D6_15 | * | homalt | 98.4421 | 99.8893 | 97.0362 | 55.3606 | 6319 | 7 | 6319 | 193 | 190 | 98.4456 | |
| bgallagher-sentieon | INDEL | I16_PLUS | * | * | 97.0316 | 96.1110 | 97.9699 | 70.7650 | 6129 | 248 | 6129 | 127 | 100 | 78.7402 | |
| bgallagher-sentieon | INDEL | I16_PLUS | * | het | 98.5008 | 98.2708 | 98.7318 | 75.5383 | 2671 | 47 | 2647 | 34 | 10 | 29.4118 | |
| bgallagher-sentieon | INDEL | I16_PLUS | * | hetalt | 95.0034 | 90.6101 | 99.8444 | 57.6357 | 1901 | 197 | 1925 | 3 | 3 | 100.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | * | homalt | 97.0698 | 99.7438 | 94.5355 | 72.0279 | 1557 | 4 | 1557 | 90 | 87 | 96.6667 | |
| bgallagher-sentieon | INDEL | C6_15 | * | * | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 7 | 0 | 0 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | C6_15 | * | het | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 7 | 0 | 0 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | C6_15 | * | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | C6_15 | * | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | I1_5 | * | * | 99.4227 | 99.2586 | 99.5873 | 58.2134 | 149547 | 1117 | 149597 | 620 | 500 | 80.6452 | |
| bgallagher-sentieon | INDEL | I1_5 | * | het | 99.6628 | 99.6660 | 99.6596 | 60.0640 | 78777 | 264 | 78760 | 269 | 153 | 56.8773 | |
| bgallagher-sentieon | INDEL | I1_5 | * | hetalt | 96.4303 | 93.1398 | 99.9619 | 60.7048 | 10427 | 768 | 10489 | 4 | 4 | 100.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | * | homalt | 99.6433 | 99.8593 | 99.4283 | 55.0054 | 60343 | 85 | 60348 | 347 | 343 | 98.8473 | |
| bgallagher-sentieon | INDEL | C1_5 | * | * | 0.0000 | 90.0000 | 0.0000 | 0.0000 | 9 | 1 | 0 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | C1_5 | * | het | 0.0000 | 88.8889 | 0.0000 | 0.0000 | 8 | 1 | 0 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | C1_5 | * | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | C1_5 | * | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | * | * | * | 70.4960 | 69.7491 | 71.2591 | 54.1876 | 240315 | 104227 | 248606 | 100270 | 81436 | 81.2167 | |
| anovak-vg | INDEL | * | * | het | 69.4961 | 61.0200 | 80.7068 | 58.0873 | 118460 | 75673 | 131172 | 31357 | 16629 | 53.0312 | |
| anovak-vg | INDEL | * | * | hetalt | 0.0000 | 25.9341 | 0.0000 | 0.0000 | 6545 | 18692 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | * | * | homalt | 74.8405 | 92.1212 | 63.0190 | 50.1342 | 115310 | 9862 | 117434 | 68913 | 64807 | 94.0418 | |
| anovak-vg | INDEL | C16_PLUS | * | * | 0.0000 | 0.0000 | 20.0000 | 90.1961 | 0 | 0 | 1 | 4 | 0 | 0.0000 | |
| anovak-vg | INDEL | C16_PLUS | * | het | 0.0000 | 0.0000 | 25.0000 | 90.2439 | 0 | 0 | 1 | 3 | 0 | 0.0000 | |
| anovak-vg | INDEL | C16_PLUS | * | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | C16_PLUS | * | homalt | 0.0000 | 0.0000 | 90.0000 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| anovak-vg | INDEL | I16_PLUS | * | * | 32.9342 | 25.0588 | 48.0286 | 39.2493 | 1598 | 4779 | 1547 | 1674 | 1112 | 66.4277 | |
| anovak-vg | INDEL | I16_PLUS | * | het | 20.3076 | 12.3988 | 56.0773 | 46.0104 | 337 | 2381 | 406 | 318 | 57 | 17.9245 | |
| anovak-vg | INDEL | I16_PLUS | * | hetalt | 0.0000 | 7.1020 | 0.0000 | 0.0000 | 149 | 1949 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | I16_PLUS | * | homalt | 55.6761 | 71.2364 | 45.6948 | 36.9604 | 1112 | 449 | 1141 | 1356 | 1055 | 77.8024 | |
| anovak-vg | INDEL | D6_15 | * | * | 67.2100 | 61.4480 | 74.1646 | 48.0426 | 16033 | 10059 | 16202 | 5644 | 4329 | 76.7009 | |
| anovak-vg | INDEL | D6_15 | * | het | 76.4820 | 81.7202 | 71.8750 | 45.3746 | 9473 | 2119 | 11523 | 4509 | 3518 | 78.0217 | |
| anovak-vg | INDEL | D6_15 | * | hetalt | 0.0000 | 24.6269 | 0.0000 | 0.0000 | 2013 | 6161 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D6_15 | * | homalt | 75.9353 | 71.8780 | 80.4782 | 54.2097 | 4547 | 1779 | 4679 | 1135 | 811 | 71.4537 | |
| anovak-vg | INDEL | C1_5 | * | * | 51.8752 | 80.0000 | 38.3817 | 91.6130 | 8 | 2 | 185 | 297 | 25 | 8.4175 | |
| anovak-vg | INDEL | C1_5 | * | het | 40.9055 | 77.7778 | 27.7500 | 90.6933 | 7 | 2 | 111 | 289 | 20 | 6.9204 | |
| anovak-vg | INDEL | C1_5 | * | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | C1_5 | * | homalt | 0.0000 | 0.0000 | 90.2439 | 94.3409 | 0 | 0 | 74 | 8 | 5 | 62.5000 | |
| anovak-vg | INDEL | D16_PLUS | * | * | 64.9199 | 56.1321 | 76.9701 | 52.6377 | 3808 | 2976 | 3780 | 1131 | 815 | 72.0601 | |
| anovak-vg | INDEL | D16_PLUS | * | het | 72.6101 | 70.2754 | 75.1054 | 49.0881 | 2220 | 939 | 2495 | 827 | 601 | 72.6723 | |
| anovak-vg | INDEL | D16_PLUS | * | hetalt | 0.0000 | 16.4511 | 0.0000 | 0.0000 | 318 | 1615 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D16_PLUS | * | homalt | 77.8556 | 75.0591 | 80.8685 | 58.6629 | 1270 | 422 | 1285 | 304 | 214 | 70.3947 | |
| anovak-vg | INDEL | D1_5 | * | * | 90.2130 | 89.2296 | 91.2183 | 56.6455 | 130940 | 15805 | 132532 | 12759 | 9010 | 70.6168 | |
| anovak-vg | INDEL | D1_5 | * | het | 92.1131 | 94.4127 | 89.9228 | 55.4448 | 82681 | 4893 | 86771 | 9724 | 6623 | 68.1098 | |