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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1685 1686 1687 1688 1689 1690 1691 1692 1693 ... 1720 1721 » 84401-84450 / 86044 show all
hfeng-pmm2	SNP	*	*	*	99.9416	99.9254	99.9579	18.8175	3052339	2280	3052202	1287	114	8.8578
hfeng-pmm2	SNP	*	*	het	99.9111	99.8854	99.9369	19.2150	1871439	2148	1871315	1181	42	3.5563
hfeng-pmm2	SNP	*	*	hetalt	99.8851	99.7704	100.0000	49.0323	869	2	869	0	0
hfeng-pmm2	SNP	*	*	homalt	99.9900	99.9890	99.9910	18.1427	1180031	130	1180018	106	72	67.9245
hfeng-pmm3	INDEL	D16_PLUS	*	*	97.6998	96.8013	98.6151	66.5273	6567	217	6551	92	69	75.0000
hfeng-pmm3	INDEL	D16_PLUS	*	het	97.3472	97.4992	97.1956	74.5540	3080	79	2842	82	62	75.6098
hfeng-pmm3	INDEL	D16_PLUS	*	hetalt	96.6173	93.5851	99.8525	38.5313	1809	124	2031	3	3	100.0000
hfeng-pmm3	INDEL	D16_PLUS	*	homalt	99.3781	99.1726	99.5846	66.6072	1678	14	1678	7	4	57.1429
hfeng-pmm3	INDEL	C1_5	*	*	0.0000	90.0000	0.0000	0.0000	9	1	0	0	0
hfeng-pmm3	INDEL	C1_5	*	het	0.0000	88.8889	0.0000	0.0000	8	1	0	0	0
hfeng-pmm3	INDEL	C1_5	*	hetalt	0.0000	100.0000	0.0000	0.0000	1	0	0	0	0
hfeng-pmm3	INDEL	C1_5	*	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
hfeng-pmm3	INDEL	C6_15	*	*	0.0000	100.0000	0.0000	0.0000	7	0	0	0	0
hfeng-pmm3	INDEL	C6_15	*	het	0.0000	100.0000	0.0000	0.0000	7	0	0	0	0
hfeng-pmm3	INDEL	C6_15	*	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
hfeng-pmm3	INDEL	C6_15	*	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
hfeng-pmm2	SNP	ti	*	*	99.9484	99.9340	99.9629	17.4396	2084135	1376	2084077	774	72	9.3023
hfeng-pmm2	SNP	ti	*	het	99.9215	99.8989	99.9442	17.8405	1280595	1296	1280545	715	24	3.3566
hfeng-pmm2	SNP	ti	*	hetalt	99.8279	99.6564	100.0000	47.9821	580	2	580	0	0
hfeng-pmm2	SNP	ti	*	homalt	99.9915	99.9903	99.9927	16.7561	802960	78	802952	59	48	81.3559
hfeng-pmm3	INDEL	*	*	*	99.3628	99.0161	99.7120	56.9384	341152	3390	341013	985	798	81.0152
hfeng-pmm3	INDEL	*	*	het	99.4705	99.1923	99.7504	58.0356	192565	1568	192191	481	313	65.0728
hfeng-pmm3	INDEL	*	*	hetalt	96.7703	93.7869	99.9498	57.3944	23669	1568	23894	12	10	83.3333
hfeng-pmm3	INDEL	*	*	homalt	99.7023	99.7971	99.6077	55.0410	124918	254	124928	492	475	96.5447
hfeng-pmm3	INDEL	C16_PLUS	*	*		0.0000	0.0000	0.0000	0	0	0	0	0
hfeng-pmm3	INDEL	C16_PLUS	*	het		0.0000	0.0000	0.0000	0	0	0	0	0
hfeng-pmm3	INDEL	C16_PLUS	*	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
hfeng-pmm3	INDEL	C16_PLUS	*	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
hfeng-pmm2	SNP	tv	*	*	99.9268	99.9066	99.9471	21.6564	968784	906	968705	513	42	8.1871
hfeng-pmm2	SNP	tv	*	het	99.8886	99.8560	99.9212	22.0414	590844	852	590770	466	18	3.8627
hfeng-pmm2	SNP	tv	*	hetalt	99.8851	99.7704	100.0000	49.0323	869	2	869	0	0
hfeng-pmm2	SNP	tv	*	homalt	99.9869	99.9862	99.9875	20.9465	377071	52	377066	47	24	51.0638
jlack-gatk	SNP	tv	*	*	99.5956	99.9388	99.2547	27.4223	969097	593	969008	7276	194	2.6663
jlack-gatk	SNP	tv	*	het	99.3606	99.9332	98.7945	31.3268	591301	395	591230	7214	153	2.1209
jlack-gatk	SNP	tv	*	hetalt	99.0280	99.4259	98.6333	53.8866	866	5	866	12	11	91.6667
jlack-gatk	SNP	tv	*	homalt	99.9678	99.9488	99.9867	20.1040	376930	193	376912	50	30	60.0000
jlack-gatk	INDEL	I16_PLUS	*	*	95.3468	94.3077	96.4091	70.3461	6014	363	6014	224	155	69.1964
jlack-gatk	INDEL	I16_PLUS	*	het	96.8584	96.8359	96.8808	75.4914	2632	86	2609	84	21	25.0000
jlack-gatk	INDEL	I16_PLUS	*	hetalt	92.9357	87.1306	99.5697	57.5280	1828	270	1851	8	7	87.5000
jlack-gatk	INDEL	I16_PLUS	*	homalt	95.7191	99.5516	92.1708	70.2698	1554	7	1554	132	127	96.2121
jli-custom	INDEL	*	*	*	99.3675	99.0788	99.6580	57.6935	341368	3174	341213	1171	951	81.2126
jli-custom	INDEL	*	*	het	99.5119	99.3015	99.7232	58.0133	192777	1356	192389	534	340	63.6704
jli-custom	INDEL	*	*	hetalt	96.4996	93.5214	99.6737	57.4952	23602	1635	23825	78	76	97.4359
jli-custom	INDEL	*	*	homalt	99.7041	99.8538	99.5548	57.2311	124989	183	124999	559	535	95.7066
jli-custom	INDEL	C16_PLUS	*	*		0.0000	0.0000	0.0000	0	0	0	0	0
jli-custom	INDEL	C16_PLUS	*	het		0.0000	0.0000	0.0000	0	0	0	0	0
jli-custom	INDEL	C16_PLUS	*	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
jli-custom	INDEL	C16_PLUS	*	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
jlack-gatk	SNP	ti	*	*	99.7777	99.9393	99.6165	21.7408	2084246	1265	2084182	8024	364	4.5364
jlack-gatk	SNP	ti	*	het	99.6581	99.9316	99.3861	24.9292	1281014	877	1280960	7913	288	3.6396

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