PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
84351-84400 / 86044 show all | |||||||||||||||
| hfeng-pmm3 | INDEL | I6_15 | * | hetalt | 96.4340 | 93.1353 | 99.9750 | 38.6184 | 7964 | 587 | 8004 | 2 | 2 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | * | homalt | 98.2839 | 99.5993 | 97.0028 | 48.9358 | 6214 | 25 | 6214 | 192 | 191 | 99.4792 | |
| hfeng-pmm3 | INDEL | D6_15 | * | * | 98.0738 | 96.8879 | 99.2891 | 51.0206 | 25280 | 812 | 25279 | 181 | 162 | 89.5028 | |
| hfeng-pmm3 | INDEL | D6_15 | * | het | 98.2130 | 97.5673 | 98.8673 | 58.6531 | 11310 | 282 | 11260 | 129 | 115 | 89.1473 | |
| hfeng-pmm3 | INDEL | D6_15 | * | hetalt | 96.8203 | 93.8708 | 99.9612 | 33.0763 | 7673 | 501 | 7722 | 3 | 2 | 66.6667 | |
| hfeng-pmm3 | INDEL | D6_15 | * | homalt | 99.3845 | 99.5416 | 99.2279 | 50.7795 | 6297 | 29 | 6297 | 49 | 45 | 91.8367 | |
| hfeng-pmm3 | INDEL | I1_5 | * | * | 99.5494 | 99.2672 | 99.8332 | 56.8186 | 149560 | 1104 | 149606 | 250 | 187 | 74.8000 | |
| hfeng-pmm3 | INDEL | I1_5 | * | het | 99.7016 | 99.5433 | 99.8604 | 59.2337 | 78680 | 361 | 78661 | 110 | 51 | 46.3636 | |
| hfeng-pmm3 | INDEL | I1_5 | * | hetalt | 97.1290 | 94.4350 | 99.9812 | 61.2138 | 10572 | 623 | 10632 | 2 | 2 | 100.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | * | homalt | 99.7866 | 99.8014 | 99.7717 | 52.1729 | 60308 | 120 | 60313 | 138 | 134 | 97.1014 | |
| hfeng-pmm3 | SNP | * | * | * | 99.9548 | 99.9339 | 99.9756 | 18.3516 | 3052601 | 2018 | 3052460 | 744 | 76 | 10.2151 | |
| hfeng-pmm3 | SNP | * | * | het | 99.9317 | 99.8994 | 99.9639 | 18.5779 | 1871702 | 1885 | 1871578 | 675 | 30 | 4.4444 | |
| hfeng-pmm3 | SNP | * | * | hetalt | 99.8277 | 99.7704 | 99.8851 | 46.7890 | 869 | 2 | 869 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | SNP | * | * | homalt | 99.9916 | 99.9889 | 99.9942 | 17.9575 | 1180030 | 131 | 1180013 | 68 | 45 | 66.1765 | |
| hfeng-pmm3 | INDEL | I16_PLUS | * | * | 97.6899 | 96.4874 | 98.9228 | 68.1825 | 6153 | 224 | 6153 | 67 | 53 | 79.1045 | |
| hfeng-pmm3 | INDEL | I16_PLUS | * | het | 98.6061 | 97.7557 | 99.4715 | 72.8336 | 2657 | 61 | 2635 | 14 | 3 | 21.4286 | |
| hfeng-pmm3 | INDEL | I16_PLUS | * | hetalt | 96.0725 | 92.6597 | 99.7463 | 58.0281 | 1944 | 154 | 1966 | 5 | 5 | 100.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | * | homalt | 98.1968 | 99.4234 | 97.0000 | 68.6397 | 1552 | 9 | 1552 | 48 | 45 | 93.7500 | |
| hfeng-pmm2 | INDEL | C1_5 | * | * | 0.0000 | 90.0000 | 0.0000 | 0.0000 | 9 | 1 | 0 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | C1_5 | * | het | 0.0000 | 88.8889 | 0.0000 | 0.0000 | 8 | 1 | 0 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | C1_5 | * | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | C1_5 | * | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | I6_15 | * | * | 97.8481 | 96.8980 | 98.8171 | 51.0141 | 24053 | 770 | 24058 | 288 | 265 | 92.0139 | |
| hfeng-pmm2 | INDEL | I6_15 | * | het | 98.7550 | 98.1162 | 99.4021 | 57.6463 | 9844 | 189 | 9809 | 59 | 39 | 66.1017 | |
| hfeng-pmm2 | INDEL | I6_15 | * | hetalt | 96.6097 | 93.4744 | 99.9627 | 39.2455 | 7993 | 558 | 8033 | 3 | 3 | 100.0000 | |
| hfeng-pmm2 | INDEL | I6_15 | * | homalt | 98.0364 | 99.6314 | 96.4918 | 51.1007 | 6216 | 23 | 6216 | 226 | 223 | 98.6726 | |
| hfeng-pmm2 | INDEL | I1_5 | * | * | 99.4998 | 99.2726 | 99.7280 | 57.5644 | 149568 | 1096 | 149613 | 408 | 306 | 75.0000 | |
| hfeng-pmm2 | INDEL | I1_5 | * | het | 99.6023 | 99.4952 | 99.7096 | 59.9116 | 78642 | 399 | 78624 | 229 | 130 | 56.7686 | |
| hfeng-pmm2 | INDEL | I1_5 | * | hetalt | 97.2753 | 94.7119 | 99.9812 | 62.6532 | 10603 | 592 | 10662 | 2 | 2 | 100.0000 | |
| hfeng-pmm2 | INDEL | I1_5 | * | homalt | 99.7668 | 99.8262 | 99.7075 | 52.8322 | 60323 | 105 | 60327 | 177 | 174 | 98.3051 | |
| hfeng-pmm2 | INDEL | C6_15 | * | * | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 7 | 0 | 0 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | C6_15 | * | het | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 7 | 0 | 0 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | C6_15 | * | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | C6_15 | * | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | D1_5 | * | * | 99.4930 | 99.1557 | 99.8326 | 57.8117 | 145506 | 1239 | 145558 | 244 | 146 | 59.8361 | |
| hfeng-pmm2 | INDEL | D1_5 | * | het | 99.5604 | 99.3114 | 99.8107 | 56.3200 | 86971 | 603 | 86977 | 165 | 71 | 43.0303 | |
| hfeng-pmm2 | INDEL | D1_5 | * | hetalt | 97.1704 | 94.5242 | 99.9692 | 63.6326 | 9684 | 561 | 9726 | 3 | 1 | 33.3333 | |
| hfeng-pmm2 | INDEL | D1_5 | * | homalt | 99.8457 | 99.8467 | 99.8447 | 59.0004 | 48851 | 75 | 48855 | 76 | 74 | 97.3684 | |
| hfeng-pmm2 | INDEL | D6_15 | * | * | 98.0668 | 96.9186 | 99.2426 | 51.7103 | 25288 | 804 | 25288 | 193 | 170 | 88.0829 | |
| hfeng-pmm2 | INDEL | D6_15 | * | het | 98.1073 | 97.3775 | 98.8481 | 59.1502 | 11288 | 304 | 11242 | 131 | 113 | 86.2595 | |
| hfeng-pmm2 | INDEL | D6_15 | * | hetalt | 96.9508 | 94.1277 | 99.9483 | 34.1160 | 7694 | 480 | 7740 | 4 | 3 | 75.0000 | |
| hfeng-pmm2 | INDEL | D6_15 | * | homalt | 99.3853 | 99.6838 | 99.0886 | 51.6854 | 6306 | 20 | 6306 | 58 | 54 | 93.1034 | |
| hfeng-pmm2 | INDEL | I16_PLUS | * | * | 97.5355 | 96.5031 | 98.5902 | 69.5601 | 6154 | 223 | 6154 | 88 | 61 | 69.3182 | |
| hfeng-pmm2 | INDEL | I16_PLUS | * | het | 98.4237 | 97.9029 | 98.9501 | 74.4344 | 2661 | 57 | 2639 | 28 | 4 | 14.2857 | |
| hfeng-pmm2 | INDEL | I16_PLUS | * | hetalt | 95.9205 | 92.4214 | 99.6950 | 58.3968 | 1939 | 159 | 1961 | 6 | 6 | 100.0000 | |
| hfeng-pmm2 | INDEL | I16_PLUS | * | homalt | 98.0751 | 99.5516 | 96.6418 | 69.9214 | 1554 | 7 | 1554 | 54 | 51 | 94.4444 | |
| hfeng-pmm2 | INDEL | D16_PLUS | * | * | 97.4049 | 96.6244 | 98.1982 | 67.4168 | 6555 | 229 | 6540 | 120 | 70 | 58.3333 | |
| hfeng-pmm2 | INDEL | D16_PLUS | * | het | 96.8404 | 97.0560 | 96.6258 | 75.3280 | 3066 | 93 | 2835 | 99 | 55 | 55.5556 | |
| hfeng-pmm2 | INDEL | D16_PLUS | * | hetalt | 96.6998 | 93.7403 | 99.8523 | 39.1187 | 1812 | 121 | 2028 | 3 | 3 | 100.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | * | homalt | 99.0257 | 99.1135 | 98.9381 | 67.4789 | 1677 | 15 | 1677 | 18 | 12 | 66.6667 | |