PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
83051-83100 / 86044 show all | |||||||||||||||
| gduggal-bwaplat | INDEL | * | decoy | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.9050 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | decoy | homalt | 100.0000 | 100.0000 | 100.0000 | 99.9296 | 3 | 0 | 3 | 0 | 0 | ||
| gduggal-snapfb | INDEL | * | decoy | * | 57.1429 | 40.0000 | 100.0000 | 99.9776 | 4 | 6 | 4 | 0 | 0 | ||
| gduggal-snapfb | INDEL | * | decoy | het | 50.0000 | 33.3333 | 100.0000 | 99.9769 | 2 | 4 | 3 | 0 | 0 | ||
| gduggal-snapfb | INDEL | * | decoy | hetalt | 100.0000 | 100.0000 | 1 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | * | decoy | homalt | 50.0000 | 33.3333 | 100.0000 | 99.9773 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-snapfb | INDEL | C16_PLUS | decoy | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | C16_PLUS | decoy | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | C16_PLUS | decoy | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | C16_PLUS | decoy | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | SNP | * | decoy | * | 0.0000 | 0.0000 | 100.0000 | 99.9992 | 0 | 0 | 2 | 0 | 0 | ||
| gduggal-bwavard | SNP | * | decoy | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwavard | SNP | * | decoy | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | SNP | * | decoy | homalt | 0.0000 | 0.0000 | 100.0000 | 99.9933 | 0 | 0 | 2 | 0 | 0 | ||
| gduggal-bwavard | SNP | tv | decoy | * | 0.0000 | 0.0000 | 100.0000 | 99.9989 | 0 | 0 | 1 | 0 | 0 | ||
| gduggal-bwavard | SNP | tv | decoy | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwavard | SNP | tv | decoy | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | SNP | tv | decoy | homalt | 0.0000 | 0.0000 | 100.0000 | 99.9905 | 0 | 0 | 1 | 0 | 0 | ||
| gduggal-snapfb | INDEL | C6_15 | decoy | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | C6_15 | decoy | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | C6_15 | decoy | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | C6_15 | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | D16_PLUS | decoy | * | 0.0000 | 0.0000 | 0.0000 | 0 | 6 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | D16_PLUS | decoy | het | 0.0000 | 0.0000 | 0.0000 | 0 | 4 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | D16_PLUS | decoy | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | D16_PLUS | decoy | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 2 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | C1_5 | decoy | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | C1_5 | decoy | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | C1_5 | decoy | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | C1_5 | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwavard | SNP | ti | decoy | * | 0.0000 | 0.0000 | 100.0000 | 99.9987 | 0 | 0 | 2 | 0 | 0 | ||
| gduggal-bwavard | SNP | ti | decoy | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwavard | SNP | ti | decoy | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | SNP | ti | decoy | homalt | 0.0000 | 0.0000 | 100.0000 | 99.9898 | 0 | 0 | 2 | 0 | 0 | ||
| gduggal-bwavard | INDEL | C6_15 | decoy | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwavard | INDEL | C6_15 | decoy | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwavard | INDEL | C6_15 | decoy | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | C6_15 | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwavard | INDEL | D1_5 | decoy | * | 85.7143 | 75.0000 | 100.0000 | 99.9740 | 3 | 1 | 3 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | decoy | het | 100.0000 | 100.0000 | 100.0000 | 99.9810 | 2 | 0 | 2 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | decoy | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | D1_5 | decoy | homalt | 100.0000 | 100.0000 | 100.0000 | 99.9047 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D6_15 | decoy | * | 0.0000 | 0.0000 | 99.8955 | 0 | 1 | 0 | 2 | 1 | 50.0000 | ||
| gduggal-bwavard | INDEL | D6_15 | decoy | het | 0.0000 | 0.0000 | 99.8893 | 0 | 0 | 0 | 2 | 1 | 50.0000 | ||
| gduggal-bwavard | INDEL | D6_15 | decoy | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | D6_15 | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwavard | INDEL | D16_PLUS | decoy | * | 90.9091 | 83.3333 | 100.0000 | 99.4808 | 5 | 1 | 5 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D16_PLUS | decoy | het | 85.7143 | 75.0000 | 100.0000 | 99.5580 | 3 | 1 | 4 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D16_PLUS | decoy | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | D16_PLUS | decoy | homalt | 100.0000 | 100.0000 | 100.0000 | 98.2759 | 2 | 0 | 1 | 0 | 0 | ||