PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubset GenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
82451-82500 / 86044 show all
anovak-vgSNPtifunc_cdshetalt
0.0000
37.5000
0.0000
0.0000
35000
anovak-vgSNPtifunc_cdshomalt
99.1630
98.9384
99.3887
18.9378
52195652033230
93.7500
anovak-vgINDELI6_15func_cds*
63.7892
60.4651
67.5000
37.5000
2617271310
76.9231
anovak-vgINDELI6_15func_cdshet
56.0784
45.8333
72.2222
40.0000
11131353
60.0000
anovak-vgINDELI6_15func_cdshetalt
0.0000
25.0000
0.0000
0.0000
13000
anovak-vgINDELI6_15func_cdshomalt
75.6757
93.3333
63.6364
35.2941
1411487
87.5000
astatham-gatkINDELC16_PLUSfunc_cds*
0.0000
0.0000
0.0000
00000
astatham-gatkINDELC16_PLUSfunc_cdshet
0.0000
0.0000
0.0000
00000
astatham-gatkINDELC16_PLUSfunc_cdshetalt
0.0000
0.0000
0.0000
00000
astatham-gatkINDELC16_PLUSfunc_cdshomalt
0.0000
0.0000
0.0000
00000
astatham-gatkINDELC1_5func_cds*
0.0000
0.0000
0.0000
00000
astatham-gatkINDELC1_5func_cdshet
0.0000
0.0000
0.0000
00000
astatham-gatkINDELC1_5func_cdshetalt
0.0000
0.0000
0.0000
00000
astatham-gatkINDELC1_5func_cdshomalt
0.0000
0.0000
0.0000
00000
anovak-vgINDELI1_5func_cds*
77.5623
77.7778
77.3481
34.6570
140401404129
70.7317
anovak-vgINDELI1_5func_cdshet
53.0612
44.0678
66.6667
45.0704
263326133
23.0769
anovak-vgINDELI1_5func_cdshetalt
0.0000
0.0000
0.0000
02000
anovak-vgINDELI1_5func_cdshomalt
87.3563
95.7983
80.2817
31.0680
11451142826
92.8571
astatham-gatkINDEL*func_cds*
99.5531
99.7753
99.3318
44.9080
444144631
33.3333
astatham-gatkINDEL*func_cdshet
99.5392
100.0000
99.0826
50.0000
214021620
0.0000
astatham-gatkINDEL*func_cdshetalt
88.8889
80.0000
100.0000
60.0000
41400
astatham-gatkINDEL*func_cdshomalt
99.7792
100.0000
99.5595
38.4824
226022611
100.0000
anovak-vgSNPtvfunc_cds*
98.2741
97.7580
98.7957
36.4158
42739842665232
61.5385
anovak-vgSNPtvfunc_cdshet
97.9570
97.3654
98.5557
42.0612
25877025933821
55.2632
anovak-vgSNPtvfunc_cdshetalt
0.0000
30.0000
0.0000
0.0000
37000
anovak-vgSNPtvfunc_cdshomalt
98.9685
98.7676
99.1701
25.0222
16832116731411
78.5714
anovak-vgINDELC6_15func_cds*
0.0000
0.0000
0.0000
00000
anovak-vgINDELC6_15func_cdshet
0.0000
0.0000
0.0000
00000
anovak-vgINDELC6_15func_cdshetalt
0.0000
0.0000
0.0000
00000
anovak-vgINDELC6_15func_cdshomalt
0.0000
0.0000
0.0000
00000
anovak-vgINDELD6_15func_cds*
79.0123
74.4186
84.2105
49.3333
32113265
83.3333
anovak-vgINDELD6_15func_cdshet
81.3559
82.7586
80.0000
46.4286
2452465
83.3333
anovak-vgINDELD6_15func_cdshetalt
0.0000
0.0000
0.0000
02000
anovak-vgINDELD6_15func_cdshomalt
80.0000
66.6667
100.0000
57.8947
84800
anovak-vgINDELC1_5func_cds*
0.0000
100.0000
00000
anovak-vgINDELC1_5func_cdshet
0.0000
100.0000
00000
anovak-vgINDELC1_5func_cdshetalt
0.0000
0.0000
0.0000
00000
anovak-vgINDELC1_5func_cdshomalt
0.0000
100.0000
00000
anovak-vgINDELD1_5func_cds*
92.1630
92.4528
91.8750
37.7432
14712147139
69.2308
anovak-vgINDELD1_5func_cdshet
90.3955
94.1176
86.9565
42.5000
80580128
66.6667
anovak-vgINDELD1_5func_cdshetalt
0.0000
0.0000
0.0000
00000
anovak-vgINDELD1_5func_cdshomalt
94.3662
90.5405
98.5294
29.8969
6776711
100.0000
anovak-vgINDEL*func_cds*
81.4334
80.2247
82.6790
38.5816
357883587554
72.0000
anovak-vgINDEL*func_cdshet
74.7761
69.6262
80.7487
43.8438
149651513619
52.7778
anovak-vgINDEL*func_cdshetalt
0.0000
20.0000
0.0000
0.0000
14000
anovak-vgINDEL*func_cdshomalt
87.7119
91.5929
84.1463
33.8710
207192073935
89.7436
anovak-vgINDELC16_PLUSfunc_cds*
0.0000
0.0000
0.0000
00000
anovak-vgINDELC16_PLUSfunc_cdshet
0.0000
0.0000
0.0000
00000
anovak-vgINDELC16_PLUSfunc_cdshetalt
0.0000
0.0000
0.0000
00000
anovak-vgINDELC16_PLUSfunc_cdshomalt
0.0000
0.0000
0.0000
00000