PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
82401-82450 / 86044 show all | |||||||||||||||
| bgallagher-sentieon | SNP | tv | func_cds | * | 99.8287 | 100.0000 | 99.6579 | 29.0453 | 4371 | 0 | 4370 | 15 | 0 | 0.0000 | |
| bgallagher-sentieon | SNP | tv | func_cds | het | 99.7184 | 100.0000 | 99.4384 | 31.4601 | 2657 | 0 | 2656 | 15 | 0 | 0.0000 | |
| bgallagher-sentieon | SNP | tv | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 56.5217 | 10 | 0 | 10 | 0 | 0 | ||
| bgallagher-sentieon | SNP | tv | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 24.6018 | 1704 | 0 | 1704 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I6_15 | func_cds | * | 97.6744 | 97.6744 | 97.6744 | 38.5714 | 42 | 1 | 42 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | INDEL | I6_15 | func_cds | het | 100.0000 | 100.0000 | 100.0000 | 38.4615 | 24 | 0 | 24 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I6_15 | func_cds | hetalt | 85.7143 | 75.0000 | 100.0000 | 25.0000 | 3 | 1 | 3 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I6_15 | func_cds | homalt | 96.7742 | 100.0000 | 93.7500 | 40.7407 | 15 | 0 | 15 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | SNP | ti | func_cds | * | 99.9094 | 99.9565 | 99.8623 | 22.5049 | 13781 | 6 | 13779 | 19 | 0 | 0.0000 | |
| bgallagher-sentieon | SNP | ti | func_cds | het | 99.8707 | 99.9647 | 99.7769 | 24.1158 | 8501 | 3 | 8499 | 19 | 0 | 0.0000 | |
| bgallagher-sentieon | SNP | ti | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 46.6667 | 8 | 0 | 8 | 0 | 0 | ||
| bgallagher-sentieon | SNP | ti | func_cds | homalt | 99.9716 | 99.9431 | 100.0000 | 19.6954 | 5272 | 3 | 5272 | 0 | 0 | ||
| astatham-gatk | SNP | tv | func_cds | * | 99.8283 | 99.7483 | 99.9083 | 29.1951 | 4360 | 11 | 4359 | 4 | 0 | 0.0000 | |
| astatham-gatk | SNP | tv | func_cds | het | 99.7173 | 99.5860 | 99.8490 | 31.6916 | 2646 | 11 | 2645 | 4 | 0 | 0.0000 | |
| astatham-gatk | SNP | tv | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 56.5217 | 10 | 0 | 10 | 0 | 0 | ||
| astatham-gatk | SNP | tv | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 24.6351 | 1704 | 0 | 1704 | 0 | 0 | ||
| asubramanian-gatk | INDEL | C6_15 | func_cds | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| asubramanian-gatk | INDEL | C6_15 | func_cds | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| asubramanian-gatk | INDEL | C6_15 | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| asubramanian-gatk | INDEL | C6_15 | func_cds | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| asubramanian-gatk | INDEL | D16_PLUS | func_cds | * | 100.0000 | 100.0000 | 100.0000 | 82.3529 | 12 | 0 | 12 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D16_PLUS | func_cds | het | 100.0000 | 100.0000 | 100.0000 | 84.0000 | 8 | 0 | 8 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D16_PLUS | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| asubramanian-gatk | INDEL | D16_PLUS | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 77.7778 | 4 | 0 | 4 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D1_5 | func_cds | * | 100.0000 | 100.0000 | 100.0000 | 50.6173 | 159 | 0 | 160 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D1_5 | func_cds | het | 100.0000 | 100.0000 | 100.0000 | 59.8131 | 85 | 0 | 86 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D1_5 | func_cds | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| asubramanian-gatk | INDEL | D1_5 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 32.1101 | 74 | 0 | 74 | 0 | 0 | ||
| asubramanian-gatk | INDEL | C16_PLUS | func_cds | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| asubramanian-gatk | INDEL | C16_PLUS | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| asubramanian-gatk | INDEL | C16_PLUS | func_cds | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| asubramanian-gatk | INDEL | C1_5 | func_cds | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| asubramanian-gatk | INDEL | C1_5 | func_cds | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| asubramanian-gatk | INDEL | C1_5 | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| asubramanian-gatk | INDEL | C1_5 | func_cds | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| astatham-gatk | SNP | ti | func_cds | * | 99.8730 | 99.7897 | 99.9564 | 22.5679 | 13758 | 29 | 13756 | 6 | 0 | 0.0000 | |
| astatham-gatk | SNP | ti | func_cds | het | 99.8234 | 99.7178 | 99.9293 | 24.2094 | 8480 | 24 | 8478 | 6 | 0 | 0.0000 | |
| astatham-gatk | SNP | ti | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 46.6667 | 8 | 0 | 8 | 0 | 0 | ||
| astatham-gatk | SNP | ti | func_cds | homalt | 99.9526 | 99.9052 | 100.0000 | 19.7136 | 5270 | 5 | 5270 | 0 | 0 | ||
| asubramanian-gatk | INDEL | * | func_cds | * | 98.8729 | 98.4270 | 99.3228 | 86.9360 | 438 | 7 | 440 | 3 | 1 | 33.3333 | |
| asubramanian-gatk | INDEL | * | func_cds | het | 98.5959 | 98.1308 | 99.0654 | 61.0909 | 210 | 4 | 212 | 2 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | * | func_cds | hetalt | 88.8889 | 80.0000 | 100.0000 | 63.6364 | 4 | 1 | 4 | 0 | 0 | ||
| asubramanian-gatk | INDEL | * | func_cds | homalt | 99.3348 | 99.1150 | 99.5556 | 39.8396 | 224 | 2 | 224 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | C16_PLUS | func_cds | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| anovak-vg | SNP | * | func_cds | * | 98.5581 | 98.0331 | 99.0887 | 29.8522 | 17793 | 357 | 17724 | 163 | 111 | 68.0982 | |
| anovak-vg | SNP | * | func_cds | het | 98.2393 | 97.5540 | 98.9342 | 34.7247 | 10888 | 273 | 10861 | 117 | 70 | 59.8291 | |
| anovak-vg | SNP | * | func_cds | hetalt | 0.0000 | 30.0000 | 0.0000 | 0.0000 | 3 | 7 | 0 | 0 | 0 | ||
| anovak-vg | SNP | * | func_cds | homalt | 99.1150 | 98.8967 | 99.3342 | 20.4124 | 6902 | 77 | 6863 | 46 | 41 | 89.1304 | |
| anovak-vg | SNP | ti | func_cds | * | 98.6277 | 98.0852 | 99.1763 | 27.7317 | 13523 | 264 | 13486 | 112 | 79 | 70.5357 | |
| anovak-vg | SNP | ti | func_cds | het | 98.3229 | 97.6129 | 99.0434 | 32.3272 | 8301 | 203 | 8283 | 80 | 49 | 61.2500 | |