PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
82201-82250 / 86044 show all | |||||||||||||||
| dgrover-gatk | INDEL | C1_5 | func_cds | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| dgrover-gatk | INDEL | C1_5 | func_cds | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| dgrover-gatk | INDEL | C1_5 | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| dgrover-gatk | INDEL | C1_5 | func_cds | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| dgrover-gatk | INDEL | C6_15 | func_cds | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| dgrover-gatk | INDEL | C6_15 | func_cds | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| dgrover-gatk | INDEL | C6_15 | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| dgrover-gatk | INDEL | C6_15 | func_cds | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| dgrover-gatk | INDEL | D16_PLUS | func_cds | * | 100.0000 | 100.0000 | 100.0000 | 80.3279 | 12 | 0 | 12 | 0 | 0 | ||
| dgrover-gatk | INDEL | D16_PLUS | func_cds | het | 100.0000 | 100.0000 | 100.0000 | 82.6087 | 8 | 0 | 8 | 0 | 0 | ||
| dgrover-gatk | INDEL | D16_PLUS | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| dgrover-gatk | INDEL | D16_PLUS | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 73.3333 | 4 | 0 | 4 | 0 | 0 | ||
| dgrover-gatk | INDEL | C16_PLUS | func_cds | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| dgrover-gatk | INDEL | C16_PLUS | func_cds | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| dgrover-gatk | INDEL | C16_PLUS | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| dgrover-gatk | INDEL | C16_PLUS | func_cds | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | SNP | * | func_cds | * | 99.7574 | 99.7080 | 99.8069 | 31.6969 | 18097 | 53 | 18094 | 35 | 0 | 0.0000 | |
| ckim-vqsr | SNP | * | func_cds | het | 99.7448 | 99.8029 | 99.6867 | 36.7154 | 11139 | 22 | 11136 | 35 | 0 | 0.0000 | |
| ckim-vqsr | SNP | * | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 61.5385 | 10 | 0 | 10 | 0 | 0 | ||
| ckim-vqsr | SNP | * | func_cds | homalt | 99.7774 | 99.5558 | 100.0000 | 21.6155 | 6948 | 31 | 6948 | 0 | 0 | ||
| dgrover-gatk | INDEL | * | func_cds | * | 99.5531 | 99.7753 | 99.3318 | 45.1100 | 444 | 1 | 446 | 3 | 1 | 33.3333 | |
| dgrover-gatk | INDEL | * | func_cds | het | 99.5392 | 100.0000 | 99.0826 | 50.3417 | 214 | 0 | 216 | 2 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | * | func_cds | hetalt | 88.8889 | 80.0000 | 100.0000 | 60.0000 | 4 | 1 | 4 | 0 | 0 | ||
| dgrover-gatk | INDEL | * | func_cds | homalt | 99.7792 | 100.0000 | 99.5595 | 38.4824 | 226 | 0 | 226 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | func_cds | * | 100.0000 | 100.0000 | 100.0000 | 57.1429 | 12 | 0 | 12 | 0 | 0 | ||
| egarrison-hhga | INDEL | D16_PLUS | func_cds | het | 100.0000 | 100.0000 | 100.0000 | 60.0000 | 8 | 0 | 8 | 0 | 0 | ||
| egarrison-hhga | INDEL | D16_PLUS | func_cds | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| egarrison-hhga | INDEL | D16_PLUS | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 42.8571 | 4 | 0 | 4 | 0 | 0 | ||
| egarrison-hhga | INDEL | C16_PLUS | func_cds | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| egarrison-hhga | INDEL | C16_PLUS | func_cds | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| egarrison-hhga | INDEL | C16_PLUS | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| egarrison-hhga | INDEL | C16_PLUS | func_cds | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| egarrison-hhga | INDEL | C1_5 | func_cds | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| egarrison-hhga | INDEL | C1_5 | func_cds | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| egarrison-hhga | INDEL | C1_5 | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| egarrison-hhga | INDEL | C1_5 | func_cds | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| egarrison-hhga | INDEL | C6_15 | func_cds | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| egarrison-hhga | INDEL | C6_15 | func_cds | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| egarrison-hhga | INDEL | C6_15 | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| egarrison-hhga | INDEL | C6_15 | func_cds | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| egarrison-hhga | INDEL | D6_15 | func_cds | * | 98.8235 | 97.6744 | 100.0000 | 52.8090 | 42 | 1 | 42 | 0 | 0 | ||
| egarrison-hhga | INDEL | D6_15 | func_cds | het | 98.2456 | 96.5517 | 100.0000 | 45.0980 | 28 | 1 | 28 | 0 | 0 | ||
| egarrison-hhga | INDEL | D6_15 | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 60.0000 | 2 | 0 | 2 | 0 | 0 | ||
| egarrison-hhga | INDEL | D6_15 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 63.6364 | 12 | 0 | 12 | 0 | 0 | ||
| egarrison-hhga | INDEL | I16_PLUS | func_cds | * | 95.6522 | 91.6667 | 100.0000 | 72.5000 | 11 | 1 | 11 | 0 | 0 | ||
| egarrison-hhga | INDEL | I16_PLUS | func_cds | het | 100.0000 | 100.0000 | 100.0000 | 60.8696 | 9 | 0 | 9 | 0 | 0 | ||
| egarrison-hhga | INDEL | I16_PLUS | func_cds | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| egarrison-hhga | INDEL | I16_PLUS | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 86.6667 | 2 | 0 | 2 | 0 | 0 | ||
| egarrison-hhga | INDEL | D1_5 | func_cds | * | 99.6865 | 100.0000 | 99.3750 | 33.6100 | 159 | 0 | 159 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | D1_5 | func_cds | het | 99.4152 | 100.0000 | 98.8372 | 38.5714 | 85 | 0 | 85 | 1 | 0 | 0.0000 | |