PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
82051-82100 / 86044 show all | |||||||||||||||
| hfeng-pmm2 | SNP | * | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 62.9630 | 10 | 0 | 10 | 0 | 0 | ||
| hfeng-pmm2 | SNP | * | func_cds | homalt | 99.9928 | 99.9857 | 100.0000 | 22.0422 | 6978 | 1 | 6978 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | C6_15 | func_cds | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | INDEL | C6_15 | func_cds | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | INDEL | C6_15 | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | INDEL | C6_15 | func_cds | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | INDEL | D16_PLUS | func_cds | * | 100.0000 | 100.0000 | 100.0000 | 73.3333 | 12 | 0 | 12 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | func_cds | het | 100.0000 | 100.0000 | 100.0000 | 75.7576 | 8 | 0 | 8 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | INDEL | D16_PLUS | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 66.6667 | 4 | 0 | 4 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | * | func_cds | * | 99.6618 | 99.3258 | 100.0000 | 42.1121 | 442 | 3 | 444 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | * | func_cds | het | 99.5305 | 99.0654 | 100.0000 | 46.0957 | 212 | 2 | 214 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | * | func_cds | hetalt | 88.8889 | 80.0000 | 100.0000 | 63.6364 | 4 | 1 | 4 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | * | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 37.0474 | 226 | 0 | 226 | 0 | 0 | ||
| ckim-vqsr | INDEL | D16_PLUS | func_cds | * | 100.0000 | 100.0000 | 100.0000 | 83.3333 | 12 | 0 | 12 | 0 | 0 | ||
| ckim-vqsr | INDEL | D16_PLUS | func_cds | het | 100.0000 | 100.0000 | 100.0000 | 85.4545 | 8 | 0 | 8 | 0 | 0 | ||
| ckim-vqsr | INDEL | D16_PLUS | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | INDEL | D16_PLUS | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 76.4706 | 4 | 0 | 4 | 0 | 0 | ||
| ckim-vqsr | INDEL | I16_PLUS | func_cds | * | 95.6522 | 91.6667 | 100.0000 | 77.5510 | 11 | 1 | 11 | 0 | 0 | ||
| ckim-vqsr | INDEL | I16_PLUS | func_cds | het | 100.0000 | 100.0000 | 100.0000 | 70.0000 | 9 | 0 | 9 | 0 | 0 | ||
| ckim-vqsr | INDEL | I16_PLUS | func_cds | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| ckim-vqsr | INDEL | I16_PLUS | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 88.2353 | 2 | 0 | 2 | 0 | 0 | ||
| ckim-vqsr | INDEL | I1_5 | func_cds | * | 99.4505 | 100.0000 | 98.9071 | 47.8632 | 180 | 0 | 181 | 2 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I1_5 | func_cds | het | 98.3607 | 100.0000 | 96.7742 | 64.7727 | 59 | 0 | 60 | 2 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I1_5 | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 0.0000 | 2 | 0 | 2 | 0 | 0 | ||
| ckim-vqsr | INDEL | I1_5 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 31.2139 | 119 | 0 | 119 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | func_cds | * | 97.6744 | 97.6744 | 97.6744 | 41.0959 | 42 | 1 | 42 | 1 | 1 | 100.0000 | |
| ckim-vqsr | INDEL | I6_15 | func_cds | het | 100.0000 | 100.0000 | 100.0000 | 44.1860 | 24 | 0 | 24 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | func_cds | hetalt | 85.7143 | 75.0000 | 100.0000 | 0.0000 | 3 | 1 | 3 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | func_cds | homalt | 96.7742 | 100.0000 | 93.7500 | 40.7407 | 15 | 0 | 15 | 1 | 1 | 100.0000 | |
| ckim-vqsr | INDEL | D6_15 | func_cds | * | 100.0000 | 100.0000 | 100.0000 | 56.5657 | 43 | 0 | 43 | 0 | 0 | ||
| ckim-vqsr | INDEL | D6_15 | func_cds | het | 100.0000 | 100.0000 | 100.0000 | 53.9683 | 29 | 0 | 29 | 0 | 0 | ||
| ckim-vqsr | INDEL | D6_15 | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 60.0000 | 2 | 0 | 2 | 0 | 0 | ||
| ckim-vqsr | INDEL | D6_15 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 61.2903 | 12 | 0 | 12 | 0 | 0 | ||
| ckim-vqsr | INDEL | C1_5 | func_cds | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | INDEL | C1_5 | func_cds | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | INDEL | C1_5 | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | INDEL | C1_5 | func_cds | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | INDEL | C6_15 | func_cds | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | INDEL | C6_15 | func_cds | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | INDEL | C6_15 | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | INDEL | C6_15 | func_cds | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | INDEL | D1_5 | func_cds | * | 99.6885 | 100.0000 | 99.3789 | 53.3333 | 159 | 0 | 160 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D1_5 | func_cds | het | 99.4220 | 100.0000 | 98.8506 | 62.8205 | 85 | 0 | 86 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D1_5 | func_cds | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-vqsr | INDEL | D1_5 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 32.7273 | 74 | 0 | 74 | 0 | 0 | ||
| egarrison-hhga | SNP | * | func_cds | * | 99.9477 | 99.9725 | 99.9229 | 23.9159 | 18145 | 5 | 18145 | 14 | 0 | 0.0000 | |
| egarrison-hhga | SNP | * | func_cds | het | 99.9239 | 99.9731 | 99.8747 | 24.7221 | 11158 | 3 | 11158 | 14 | 0 | 0.0000 | |
| egarrison-hhga | SNP | * | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 56.5217 | 10 | 0 | 10 | 0 | 0 | ||
| egarrison-hhga | SNP | * | func_cds | homalt | 99.9857 | 99.9713 | 100.0000 | 22.5036 | 6977 | 2 | 6977 | 0 | 0 | ||