PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubset GenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
82001-82050 / 86044 show all
jli-customSNPtifunc_cds*
99.9166
99.9492
99.8840
21.7559
13780713780160
0.0000
jli-customSNPtifunc_cdshet
99.8825
99.9530
99.8121
22.8972
850048500160
0.0000
jli-customSNPtifunc_cdshetalt
100.0000
100.0000
100.0000
55.5556
80800
jli-customSNPtifunc_cdshomalt
99.9716
99.9431
100.0000
19.7443
52723527200
jli-customSNPtvfunc_cds*
99.8629
99.9771
99.7489
28.1332
437014370110
0.0000
jli-customSNPtvfunc_cdshet
99.7746
99.9624
99.5876
29.8712
265612656110
0.0000
jli-customSNPtvfunc_cdshetalt
100.0000
100.0000
100.0000
62.9630
1001000
jmaeng-gatkINDELC6_15func_cds*
0.0000
0.0000
0.0000
00000
jmaeng-gatkINDELC6_15func_cdshet
0.0000
0.0000
0.0000
00000
jmaeng-gatkINDELC6_15func_cdshetalt
0.0000
0.0000
0.0000
00000
jmaeng-gatkINDELC6_15func_cdshomalt
0.0000
0.0000
0.0000
00000
jmaeng-gatkINDELC16_PLUSfunc_cds*
0.0000
0.0000
0.0000
00000
jmaeng-gatkINDELC16_PLUSfunc_cdshet
0.0000
0.0000
0.0000
00000
jmaeng-gatkINDELC16_PLUSfunc_cdshetalt
0.0000
0.0000
0.0000
00000
jmaeng-gatkINDELC16_PLUSfunc_cdshomalt
0.0000
0.0000
0.0000
00000
jmaeng-gatkINDELC1_5func_cds*
0.0000
0.0000
0.0000
00000
jmaeng-gatkINDELC1_5func_cdshet
0.0000
0.0000
0.0000
00000
jmaeng-gatkINDELC1_5func_cdshetalt
0.0000
0.0000
0.0000
00000
jmaeng-gatkINDELC1_5func_cdshomalt
0.0000
0.0000
0.0000
00000
jli-customSNPtvfunc_cdshomalt
100.0000
100.0000
100.0000
24.8014
17040170400
jmaeng-gatkINDEL*func_cds*
97.9088
99.5506
96.3203
53.9841
4432445170
0.0000
jmaeng-gatkINDEL*func_cdshet
95.9801
99.5327
92.6724
62.8205
2131215170
0.0000
jmaeng-gatkINDEL*func_cdshetalt
88.8889
80.0000
100.0000
50.0000
41400
jmaeng-gatkINDEL*func_cdshomalt
100.0000
100.0000
100.0000
39.2473
226022600
jmaeng-gatkINDELD16_PLUSfunc_cds*
95.6522
91.6667
100.0000
81.6667
1111100
jmaeng-gatkINDELD16_PLUSfunc_cdshet
93.3333
87.5000
100.0000
84.4444
71700
jmaeng-gatkINDELD16_PLUSfunc_cdshetalt
0.0000
0.0000
0.0000
00000
jmaeng-gatkINDELD16_PLUSfunc_cdshomalt
100.0000
100.0000
100.0000
73.3333
40400
jli-customSNP*func_cds*
99.9036
99.9559
99.8514
23.3699
18142818142270
0.0000
jli-customSNP*func_cdshet
99.8568
99.9552
99.7586
24.6835
11156511156270
0.0000
jli-customSNP*func_cdshetalt
100.0000
100.0000
100.0000
62.9630
1001000
jli-customSNP*func_cdshomalt
99.9785
99.9570
100.0000
21.0413
69763697600
hfeng-pmm2SNPtvfunc_cds*
99.9200
100.0000
99.8401
29.0024
43710437070
0.0000
hfeng-pmm2SNPtvfunc_cdshet
99.8684
100.0000
99.7371
30.5787
26570265670
0.0000
hfeng-pmm2SNPtvfunc_cdshetalt
100.0000
100.0000
100.0000
62.9630
1001000
hfeng-pmm2SNPtvfunc_cdshomalt
100.0000
100.0000
100.0000
25.9774
17040170400
hfeng-pmm3INDELC1_5func_cds*
0.0000
0.0000
0.0000
00000
hfeng-pmm3INDELC1_5func_cdshet
0.0000
0.0000
0.0000
00000
hfeng-pmm3INDELC1_5func_cdshetalt
0.0000
0.0000
0.0000
00000
hfeng-pmm3INDELC1_5func_cdshomalt
0.0000
0.0000
0.0000
00000
hfeng-pmm2SNPtifunc_cds*
99.9166
99.9710
99.8623
22.6414
13783413781190
0.0000
hfeng-pmm2SNPtifunc_cdshet
99.8707
99.9647
99.7769
23.7626
850138499190
0.0000
hfeng-pmm2SNPtifunc_cdshetalt
100.0000
100.0000
100.0000
52.9412
80800
hfeng-pmm2SNPtifunc_cdshomalt
99.9905
99.9810
100.0000
20.6798
52741527400
hfeng-pmm3INDELC16_PLUSfunc_cds*
0.0000
0.0000
0.0000
00000
hfeng-pmm3INDELC16_PLUSfunc_cdshet
0.0000
0.0000
0.0000
00000
hfeng-pmm3INDELC16_PLUSfunc_cdshetalt
0.0000
0.0000
0.0000
00000
hfeng-pmm3INDELC16_PLUSfunc_cdshomalt
0.0000
0.0000
0.0000
00000
hfeng-pmm2SNP*func_cds*
99.9174
99.9780
99.8569
24.2548
18146418143260
0.0000
hfeng-pmm2SNP*func_cdshet
99.8702
99.9731
99.7675
25.5047
11158311155260
0.0000