PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubset GenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
81951-82000 / 86044 show all
jli-customINDELC16_PLUSfunc_cdshetalt
0.0000
0.0000
0.0000
00000
jli-customINDELC16_PLUSfunc_cdshomalt
0.0000
0.0000
0.0000
00000
jlack-gatkINDELI1_5func_cds*
97.5741
100.0000
95.2632
47.6584
180018190
0.0000
jlack-gatkINDELI1_5func_cdshet
93.0233
100.0000
86.9565
63.4921
5906090
0.0000
jlack-gatkINDELI1_5func_cdshetalt
100.0000
100.0000
100.0000
33.3333
20200
jlack-gatkINDELI1_5func_cdshomalt
100.0000
100.0000
100.0000
30.4094
119011900
jlack-gatkSNPtvfunc_cds*
98.8573
99.9771
97.7624
38.5704
4370143691000
0.0000
jlack-gatkSNPtvfunc_cdshet
98.1334
99.9624
96.3702
44.4444
2656126551000
0.0000
jlack-gatkSNPtvfunc_cdshetalt
100.0000
100.0000
100.0000
65.5172
1001000
jlack-gatkSNPtvfunc_cdshomalt
100.0000
100.0000
100.0000
25.4919
17040170400
jlack-gatkINDELI16_PLUSfunc_cds*
95.6522
91.6667
100.0000
78.8462
1111100
jlack-gatkINDELI16_PLUSfunc_cdshet
100.0000
100.0000
100.0000
71.8750
90900
jlack-gatkINDELI16_PLUSfunc_cdshetalt
0.0000
100.0000
01000
jlack-gatkINDELI16_PLUSfunc_cdshomalt
100.0000
100.0000
100.0000
88.2353
20200
jlack-gatkSNPtifunc_cds*
99.4443
99.9565
98.9373
29.0994
137816137791481
0.6757
jlack-gatkSNPtifunc_cdshet
99.1254
99.9765
98.2886
33.6861
8502285001481
0.6757
jlack-gatkSNPtifunc_cdshetalt
100.0000
100.0000
100.0000
61.9048
80800
jlack-gatkSNPtifunc_cdshomalt
99.9621
99.9242
100.0000
19.9058
52714527100
jlack-gatkINDELC1_5func_cds*
0.0000
0.0000
0.0000
00000
jlack-gatkINDELC1_5func_cdshet
0.0000
0.0000
0.0000
00000
jlack-gatkINDELC1_5func_cdshetalt
0.0000
0.0000
0.0000
00000
jlack-gatkINDELC1_5func_cdshomalt
0.0000
0.0000
0.0000
00000
jlack-gatkINDELD1_5func_cds*
97.2644
100.0000
94.6746
52.7933
159016090
0.0000
jlack-gatkINDELD1_5func_cdshet
95.0276
100.0000
90.5263
62.0000
8508690
0.0000
jlack-gatkINDELD1_5func_cdshetalt
0.0000
100.0000
00000
jlack-gatkINDELD1_5func_cdshomalt
100.0000
100.0000
100.0000
30.8411
7407400
jlack-gatkINDEL*func_cds*
97.6994
99.7753
95.7082
54.1790
4441446201
5.0000
jlack-gatkINDEL*func_cdshet
95.7871
100.0000
91.9149
63.3385
2140216190
0.0000
jlack-gatkINDEL*func_cdshetalt
88.8889
80.0000
100.0000
66.6667
41400
jlack-gatkINDEL*func_cdshomalt
99.7792
100.0000
99.5595
37.6374
226022611
100.0000
jlack-gatkINDELC16_PLUSfunc_cds*
0.0000
0.0000
0.0000
00000
jlack-gatkINDELC16_PLUSfunc_cdshet
0.0000
0.0000
0.0000
00000
jlack-gatkINDELC16_PLUSfunc_cdshetalt
0.0000
0.0000
0.0000
00000
jlack-gatkINDELC16_PLUSfunc_cdshomalt
0.0000
0.0000
0.0000
00000
jlack-gatkINDELD16_PLUSfunc_cds*
96.0000
100.0000
92.3077
81.9444
1201210
0.0000
jlack-gatkINDELD16_PLUSfunc_cdshet
94.1176
100.0000
88.8889
84.7458
80810
0.0000
jlack-gatkINDELD16_PLUSfunc_cdshetalt
0.0000
0.0000
0.0000
00000
jlack-gatkINDELD16_PLUSfunc_cdshomalt
100.0000
100.0000
100.0000
69.2308
40400
hfeng-pmm3SNPtvfunc_cds*
99.9428
99.9771
99.9085
28.1938
43701436940
0.0000
hfeng-pmm3SNPtvfunc_cdshet
99.9059
99.9624
99.8496
29.2819
26561265540
0.0000
hfeng-pmm3SNPtvfunc_cdshetalt
100.0000
100.0000
100.0000
62.9630
1001000
hfeng-pmm3SNPtvfunc_cdshomalt
100.0000
100.0000
100.0000
26.0096
17040170400
jlack-gatkINDELD6_15func_cds*
100.0000
100.0000
100.0000
57.8431
4304300
jlack-gatkINDELD6_15func_cdshet
100.0000
100.0000
100.0000
57.3529
2902900
jlack-gatkINDELD6_15func_cdshetalt
100.0000
100.0000
100.0000
60.0000
20200
jlack-gatkINDELD6_15func_cdshomalt
100.0000
100.0000
100.0000
58.6207
1201200
jlack-gatkINDELC6_15func_cds*
0.0000
0.0000
0.0000
00000
jlack-gatkINDELC6_15func_cdshet
0.0000
0.0000
0.0000
00000
jlack-gatkINDELC6_15func_cdshetalt
0.0000
0.0000
0.0000
00000
jlack-gatkINDELC6_15func_cdshomalt
0.0000
0.0000
0.0000
00000