PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
81901-81950 / 86044 show all | |||||||||||||||
| hfeng-pmm3 | INDEL | I1_5 | func_cds | * | 99.7214 | 99.4444 | 100.0000 | 33.8235 | 179 | 1 | 180 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I1_5 | func_cds | het | 99.1453 | 98.3051 | 100.0000 | 39.1753 | 58 | 1 | 59 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I1_5 | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 33.3333 | 2 | 0 | 2 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I1_5 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 30.8140 | 119 | 0 | 119 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D16_PLUS | func_cds | * | 91.6667 | 91.6667 | 91.6667 | 76.4706 | 11 | 1 | 11 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | func_cds | het | 87.5000 | 87.5000 | 87.5000 | 78.9474 | 7 | 1 | 7 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | D16_PLUS | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 69.2308 | 4 | 0 | 4 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I1_5 | func_cds | * | 99.4460 | 99.4444 | 99.4475 | 34.6570 | 179 | 1 | 180 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | I1_5 | func_cds | het | 98.3192 | 98.3051 | 98.3333 | 42.3077 | 58 | 1 | 59 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | I1_5 | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 33.3333 | 2 | 0 | 2 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I1_5 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 30.0000 | 119 | 0 | 119 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | C6_15 | func_cds | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | C6_15 | func_cds | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | C6_15 | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | C6_15 | func_cds | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | D6_15 | func_cds | * | 100.0000 | 100.0000 | 100.0000 | 53.7634 | 43 | 0 | 43 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D6_15 | func_cds | het | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 29 | 0 | 29 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D6_15 | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 60.0000 | 2 | 0 | 2 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D6_15 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 60.0000 | 12 | 0 | 12 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I16_PLUS | func_cds | * | 95.6522 | 91.6667 | 100.0000 | 74.4186 | 11 | 1 | 11 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I16_PLUS | func_cds | het | 100.0000 | 100.0000 | 100.0000 | 59.0909 | 9 | 0 | 9 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I16_PLUS | func_cds | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| hfeng-pmm2 | INDEL | I16_PLUS | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 89.4737 | 2 | 0 | 2 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | C1_5 | func_cds | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | C1_5 | func_cds | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | C1_5 | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | C1_5 | func_cds | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | I6_15 | func_cds | * | 98.8235 | 97.6744 | 100.0000 | 40.0000 | 42 | 1 | 42 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I6_15 | func_cds | het | 100.0000 | 100.0000 | 100.0000 | 40.0000 | 24 | 0 | 24 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I6_15 | func_cds | hetalt | 85.7143 | 75.0000 | 100.0000 | 25.0000 | 3 | 1 | 3 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I6_15 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 42.3077 | 15 | 0 | 15 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D1_5 | func_cds | * | 100.0000 | 100.0000 | 100.0000 | 41.1765 | 159 | 0 | 160 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D1_5 | func_cds | het | 100.0000 | 100.0000 | 100.0000 | 47.2393 | 85 | 0 | 86 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D1_5 | func_cds | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm2 | INDEL | D1_5 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 30.1887 | 74 | 0 | 74 | 0 | 0 | ||
| jlack-gatk | INDEL | I6_15 | func_cds | * | 97.6744 | 97.6744 | 97.6744 | 42.6667 | 42 | 1 | 42 | 1 | 1 | 100.0000 | |
| jlack-gatk | INDEL | I6_15 | func_cds | het | 100.0000 | 100.0000 | 100.0000 | 44.1860 | 24 | 0 | 24 | 0 | 0 | ||
| jlack-gatk | INDEL | I6_15 | func_cds | hetalt | 85.7143 | 75.0000 | 100.0000 | 40.0000 | 3 | 1 | 3 | 0 | 0 | ||
| jlack-gatk | INDEL | I6_15 | func_cds | homalt | 96.7742 | 100.0000 | 93.7500 | 40.7407 | 15 | 0 | 15 | 1 | 1 | 100.0000 | |
| jlack-gatk | SNP | * | func_cds | * | 99.3020 | 99.9614 | 98.6513 | 31.6355 | 18143 | 7 | 18140 | 248 | 1 | 0.4032 | |
| jlack-gatk | SNP | * | func_cds | het | 98.8875 | 99.9731 | 97.8251 | 36.6500 | 11158 | 3 | 11155 | 248 | 1 | 0.4032 | |
| jlack-gatk | SNP | * | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 65.5172 | 10 | 0 | 10 | 0 | 0 | ||
| jlack-gatk | SNP | * | func_cds | homalt | 99.9713 | 99.9427 | 100.0000 | 21.3464 | 6975 | 4 | 6975 | 0 | 0 | ||
| jli-custom | INDEL | * | func_cds | * | 99.4376 | 99.3258 | 99.5495 | 41.4248 | 442 | 3 | 442 | 2 | 1 | 50.0000 | |
| jli-custom | INDEL | * | func_cds | het | 99.2974 | 99.0654 | 99.5305 | 45.8015 | 212 | 2 | 212 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | * | func_cds | hetalt | 88.8889 | 80.0000 | 100.0000 | 50.0000 | 4 | 1 | 4 | 0 | 0 | ||
| jli-custom | INDEL | * | func_cds | homalt | 99.7792 | 100.0000 | 99.5595 | 36.4146 | 226 | 0 | 226 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | C16_PLUS | func_cds | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jli-custom | INDEL | C16_PLUS | func_cds | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||