PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
81251-81300 / 86044 show all | |||||||||||||||
| ckim-gatk | INDEL | D6_15 | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 60.0000 | 2 | 0 | 2 | 0 | 0 | ||
| ckim-gatk | INDEL | D6_15 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 61.2903 | 12 | 0 | 12 | 0 | 0 | ||
| ckim-gatk | INDEL | I6_15 | func_cds | * | 97.6744 | 97.6744 | 97.6744 | 41.0959 | 42 | 1 | 42 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | I6_15 | func_cds | het | 100.0000 | 100.0000 | 100.0000 | 44.1860 | 24 | 0 | 24 | 0 | 0 | ||
| ckim-gatk | INDEL | I6_15 | func_cds | hetalt | 85.7143 | 75.0000 | 100.0000 | 0.0000 | 3 | 1 | 3 | 0 | 0 | ||
| ckim-gatk | INDEL | I6_15 | func_cds | homalt | 96.7742 | 100.0000 | 93.7500 | 40.7407 | 15 | 0 | 15 | 1 | 1 | 100.0000 | |
| ckim-gatk | SNP | * | func_cds | * | 99.6618 | 99.8678 | 99.4567 | 31.5863 | 18126 | 24 | 18123 | 99 | 1 | 1.0101 | |
| ckim-gatk | SNP | * | func_cds | het | 99.5225 | 99.9283 | 99.1199 | 36.5539 | 11153 | 8 | 11150 | 99 | 1 | 1.0101 | |
| ckim-gatk | SNP | * | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 61.5385 | 10 | 0 | 10 | 0 | 0 | ||
| ckim-gatk | SNP | * | func_cds | homalt | 99.8852 | 99.7707 | 100.0000 | 21.5790 | 6963 | 16 | 6963 | 0 | 0 | ||
| ckim-gatk | SNP | ti | func_cds | * | 99.6887 | 99.8912 | 99.4870 | 29.0714 | 13772 | 15 | 13770 | 71 | 1 | 1.4085 | |
| ckim-gatk | SNP | ti | func_cds | het | 99.5548 | 99.9412 | 99.1713 | 33.6071 | 8499 | 5 | 8497 | 71 | 1 | 1.4085 | |
| ckim-gatk | SNP | ti | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 55.5556 | 8 | 0 | 8 | 0 | 0 | ||
| ckim-gatk | SNP | ti | func_cds | homalt | 99.9051 | 99.8104 | 100.0000 | 20.1183 | 5265 | 10 | 5265 | 0 | 0 | ||
| ckim-gatk | INDEL | I1_5 | func_cds | * | 99.1781 | 100.0000 | 98.3696 | 47.7273 | 180 | 0 | 181 | 3 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I1_5 | func_cds | het | 97.5610 | 100.0000 | 95.2381 | 64.4068 | 59 | 0 | 60 | 3 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I1_5 | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 0.0000 | 2 | 0 | 2 | 0 | 0 | ||
| ckim-gatk | INDEL | I1_5 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 31.2139 | 119 | 0 | 119 | 0 | 0 | ||
| ckim-gatk | INDEL | D16_PLUS | func_cds | * | 100.0000 | 100.0000 | 100.0000 | 83.3333 | 12 | 0 | 12 | 0 | 0 | ||
| ckim-gatk | INDEL | D16_PLUS | func_cds | het | 100.0000 | 100.0000 | 100.0000 | 85.4545 | 8 | 0 | 8 | 0 | 0 | ||
| ckim-gatk | INDEL | D16_PLUS | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-gatk | INDEL | D16_PLUS | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 76.4706 | 4 | 0 | 4 | 0 | 0 | ||
| ckim-gatk | INDEL | D1_5 | func_cds | * | 99.6885 | 100.0000 | 99.3789 | 53.3333 | 159 | 0 | 160 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D1_5 | func_cds | het | 99.4220 | 100.0000 | 98.8506 | 62.8205 | 85 | 0 | 86 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D1_5 | func_cds | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-gatk | INDEL | D1_5 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 32.7273 | 74 | 0 | 74 | 0 | 0 | ||
| ckim-gatk | INDEL | I16_PLUS | func_cds | * | 95.6522 | 91.6667 | 100.0000 | 77.5510 | 11 | 1 | 11 | 0 | 0 | ||
| ckim-gatk | INDEL | I16_PLUS | func_cds | het | 100.0000 | 100.0000 | 100.0000 | 70.0000 | 9 | 0 | 9 | 0 | 0 | ||
| ckim-gatk | INDEL | I16_PLUS | func_cds | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| ckim-gatk | INDEL | I16_PLUS | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 88.2353 | 2 | 0 | 2 | 0 | 0 | ||
| ckim-isaac | INDEL | C16_PLUS | func_cds | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | C16_PLUS | func_cds | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | C16_PLUS | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | C16_PLUS | func_cds | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | D16_PLUS | func_cds | * | 90.9091 | 83.3333 | 100.0000 | 56.5217 | 10 | 2 | 10 | 0 | 0 | ||
| ckim-isaac | INDEL | D16_PLUS | func_cds | het | 93.3333 | 87.5000 | 100.0000 | 61.1111 | 7 | 1 | 7 | 0 | 0 | ||
| ckim-isaac | INDEL | D16_PLUS | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | D16_PLUS | func_cds | homalt | 85.7143 | 75.0000 | 100.0000 | 40.0000 | 3 | 1 | 3 | 0 | 0 | ||
| ckim-isaac | INDEL | D1_5 | func_cds | * | 99.3671 | 98.7421 | 100.0000 | 33.7553 | 157 | 2 | 157 | 0 | 0 | ||
| ckim-isaac | INDEL | D1_5 | func_cds | het | 100.0000 | 100.0000 | 100.0000 | 42.5676 | 85 | 0 | 85 | 0 | 0 | ||
| ckim-isaac | INDEL | D1_5 | func_cds | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-isaac | INDEL | D1_5 | func_cds | homalt | 98.6301 | 97.2973 | 100.0000 | 17.2414 | 72 | 2 | 72 | 0 | 0 | ||
| ckim-isaac | INDEL | D6_15 | func_cds | * | 95.2381 | 93.0233 | 97.5610 | 48.1013 | 40 | 3 | 40 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | D6_15 | func_cds | het | 96.4901 | 96.5517 | 96.4286 | 42.8571 | 28 | 1 | 27 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | D6_15 | func_cds | hetalt | 66.6667 | 50.0000 | 100.0000 | 66.6667 | 1 | 1 | 2 | 0 | 0 | ||
| ckim-isaac | INDEL | D6_15 | func_cds | homalt | 95.6522 | 91.6667 | 100.0000 | 54.1667 | 11 | 1 | 11 | 0 | 0 | ||
| ckim-isaac | INDEL | C6_15 | func_cds | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | C6_15 | func_cds | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | C6_15 | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | C6_15 | func_cds | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||