PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
81201-81250 / 86044 show all | |||||||||||||||
| ciseli-custom | INDEL | I6_15 | func_cds | * | 53.1250 | 39.5349 | 80.9524 | 32.2581 | 17 | 26 | 17 | 4 | 4 | 100.0000 | |
| ciseli-custom | INDEL | I6_15 | func_cds | het | 52.9412 | 37.5000 | 90.0000 | 41.1765 | 9 | 15 | 9 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | I6_15 | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 4 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | I6_15 | func_cds | homalt | 61.5385 | 53.3333 | 72.7273 | 21.4286 | 8 | 7 | 8 | 3 | 3 | 100.0000 | |
| ckim-dragen | INDEL | * | func_cds | * | 98.4444 | 99.5506 | 97.3626 | 49.5006 | 443 | 2 | 443 | 12 | 1 | 8.3333 | |
| ckim-dragen | INDEL | * | func_cds | het | 97.2603 | 99.5327 | 95.0893 | 57.2519 | 213 | 1 | 213 | 11 | 0 | 0.0000 | |
| ckim-dragen | INDEL | * | func_cds | hetalt | 88.8889 | 80.0000 | 100.0000 | 63.6364 | 4 | 1 | 4 | 0 | 0 | ||
| ckim-dragen | INDEL | * | func_cds | homalt | 99.7792 | 100.0000 | 99.5595 | 37.9781 | 226 | 0 | 226 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | C16_PLUS | func_cds | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | C16_PLUS | func_cds | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | C16_PLUS | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | C16_PLUS | func_cds | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | I16_PLUS | func_cds | * | 0.0000 | 100.0000 | 0 | 12 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | I16_PLUS | func_cds | het | 0.0000 | 100.0000 | 0 | 9 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | I16_PLUS | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | I16_PLUS | func_cds | homalt | 0.0000 | 100.0000 | 0 | 2 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | C16_PLUS | func_cds | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | C16_PLUS | func_cds | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | C16_PLUS | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | C16_PLUS | func_cds | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | C6_15 | func_cds | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | C6_15 | func_cds | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | C6_15 | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | C6_15 | func_cds | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | D16_PLUS | func_cds | * | 52.6316 | 41.6667 | 71.4286 | 46.1538 | 5 | 7 | 5 | 2 | 1 | 50.0000 | |
| ciseli-custom | INDEL | D16_PLUS | func_cds | het | 50.0000 | 37.5000 | 75.0000 | 50.0000 | 3 | 5 | 3 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | D16_PLUS | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | D16_PLUS | func_cds | homalt | 57.1429 | 50.0000 | 66.6667 | 40.0000 | 2 | 2 | 2 | 1 | 0 | 0.0000 | |
| ciseli-custom | INDEL | D1_5 | func_cds | * | 91.8919 | 96.2264 | 87.9310 | 36.2637 | 153 | 6 | 153 | 21 | 4 | 19.0476 | |
| ciseli-custom | INDEL | D1_5 | func_cds | het | 88.2979 | 97.6471 | 80.5825 | 43.4066 | 83 | 2 | 83 | 20 | 4 | 20.0000 | |
| ciseli-custom | INDEL | D1_5 | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | D1_5 | func_cds | homalt | 96.5517 | 94.5946 | 98.5915 | 21.9780 | 70 | 4 | 70 | 1 | 0 | 0.0000 | |
| ciseli-custom | INDEL | D6_15 | func_cds | * | 84.7059 | 83.7209 | 85.7143 | 51.7241 | 36 | 7 | 36 | 6 | 2 | 33.3333 | |
| ciseli-custom | INDEL | D6_15 | func_cds | het | 84.7458 | 86.2069 | 83.3333 | 48.2759 | 25 | 4 | 25 | 5 | 1 | 20.0000 | |
| ciseli-custom | INDEL | D6_15 | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 2 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | D6_15 | func_cds | homalt | 91.6667 | 91.6667 | 91.6667 | 58.6207 | 11 | 1 | 11 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | C1_5 | func_cds | * | 0.0000 | 0.0000 | 82.3529 | 0 | 0 | 0 | 3 | 0 | 0.0000 | ||
| ciseli-custom | INDEL | C1_5 | func_cds | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | C1_5 | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | C1_5 | func_cds | homalt | 0.0000 | 0.0000 | 72.7273 | 0 | 0 | 0 | 3 | 0 | 0.0000 | ||
| ciseli-custom | INDEL | * | func_cds | * | 84.1100 | 83.3708 | 84.8624 | 37.1758 | 371 | 74 | 370 | 66 | 30 | 45.4545 | |
| ciseli-custom | INDEL | * | func_cds | het | 79.1762 | 80.8411 | 77.5785 | 43.6869 | 173 | 41 | 173 | 50 | 20 | 40.0000 | |
| ciseli-custom | INDEL | * | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 5 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | * | func_cds | homalt | 89.9834 | 87.6106 | 92.4883 | 28.5235 | 198 | 28 | 197 | 16 | 10 | 62.5000 | |
| cchapple-custom | SNP | tv | func_cds | * | 99.5556 | 99.9085 | 99.2053 | 32.6708 | 4367 | 4 | 4369 | 35 | 0 | 0.0000 | |
| cchapple-custom | SNP | tv | func_cds | het | 99.2733 | 99.8495 | 98.7037 | 37.1216 | 2653 | 4 | 2665 | 35 | 0 | 0.0000 | |
| cchapple-custom | SNP | tv | func_cds | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 10 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | tv | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 24.1656 | 1704 | 0 | 1704 | 0 | 0 | ||
| ckim-gatk | INDEL | D6_15 | func_cds | * | 100.0000 | 100.0000 | 100.0000 | 56.5657 | 43 | 0 | 43 | 0 | 0 | ||
| ckim-gatk | INDEL | D6_15 | func_cds | het | 100.0000 | 100.0000 | 100.0000 | 53.9683 | 29 | 0 | 29 | 0 | 0 | ||