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Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
80601-80650 / 86044 show all | |||||||||||||||
jpowers-varprowl | INDEL | C6_15 | HG002complexvar | * | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 4 | 0 | 0 | 0 | 0 | ||
jpowers-varprowl | INDEL | C6_15 | HG002complexvar | het | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 4 | 0 | 0 | 0 | 0 | ||
jpowers-varprowl | INDEL | C6_15 | HG002complexvar | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
jpowers-varprowl | INDEL | C6_15 | HG002complexvar | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
jpowers-varprowl | INDEL | * | HG002complexvar | * | 91.1605 | 89.9127 | 92.4435 | 54.5762 | 69177 | 7761 | 68949 | 5636 | 5349 | 94.9077 | |
jpowers-varprowl | INDEL | * | HG002complexvar | het | 92.4718 | 94.5577 | 90.4760 | 57.5873 | 43697 | 2515 | 43680 | 4598 | 4462 | 97.0422 | |
jpowers-varprowl | INDEL | * | HG002complexvar | hetalt | 0.0000 | 2.7305 | 0.0000 | 0.0000 | 101 | 3598 | 0 | 0 | 0 | ||
jpowers-varprowl | INDEL | * | HG002complexvar | homalt | 94.9661 | 93.9024 | 96.0543 | 47.7714 | 25379 | 1648 | 25269 | 1038 | 887 | 85.4528 | |
jpowers-varprowl | INDEL | C1_5 | HG002complexvar | * | 0.0000 | 85.7143 | 0.0000 | 0.0000 | 6 | 1 | 0 | 0 | 0 | ||
jpowers-varprowl | INDEL | C1_5 | HG002complexvar | het | 0.0000 | 85.7143 | 0.0000 | 0.0000 | 6 | 1 | 0 | 0 | 0 | ||
jpowers-varprowl | INDEL | C1_5 | HG002complexvar | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
jpowers-varprowl | INDEL | C1_5 | HG002complexvar | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
jpowers-varprowl | SNP | * | HG002complexvar | * | 99.4683 | 99.2937 | 99.6435 | 20.7160 | 749051 | 5328 | 749404 | 2681 | 1602 | 59.7538 | |
jpowers-varprowl | SNP | * | HG002complexvar | het | 99.3948 | 98.9553 | 99.8382 | 20.0313 | 460632 | 4863 | 460862 | 747 | 150 | 20.0803 | |
jpowers-varprowl | SNP | * | HG002complexvar | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 310 | 0 | 0 | 0 | |||
jpowers-varprowl | SNP | * | HG002complexvar | homalt | 99.6393 | 99.9463 | 99.3342 | 21.7803 | 288419 | 155 | 288542 | 1934 | 1452 | 75.0776 | |
jpowers-varprowl | SNP | tv | HG002complexvar | * | 99.3235 | 99.1623 | 99.4852 | 24.4097 | 244090 | 2062 | 244285 | 1264 | 803 | 63.5285 | |
jpowers-varprowl | SNP | tv | HG002complexvar | het | 99.3313 | 98.8748 | 99.7919 | 23.6187 | 149035 | 1696 | 149155 | 311 | 60 | 19.2926 | |
jpowers-varprowl | SNP | tv | HG002complexvar | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 310 | 0 | 0 | 0 | |||
jpowers-varprowl | SNP | tv | HG002complexvar | homalt | 99.4724 | 99.9411 | 99.0081 | 25.6082 | 95055 | 56 | 95130 | 953 | 743 | 77.9643 | |
ltrigg-rtg1 | INDEL | C1_5 | HG002complexvar | * | 91.9971 | 85.7143 | 99.2739 | 88.1471 | 6 | 1 | 957 | 7 | 2 | 28.5714 | |
ltrigg-rtg1 | INDEL | C1_5 | HG002complexvar | het | 91.8033 | 85.7143 | 98.8235 | 86.8787 | 6 | 1 | 420 | 5 | 1 | 20.0000 | |
ltrigg-rtg1 | INDEL | C1_5 | HG002complexvar | hetalt | 0.0000 | 0.0000 | 99.6183 | 86.5847 | 0 | 0 | 261 | 1 | 1 | 100.0000 | |
ltrigg-rtg1 | INDEL | C1_5 | HG002complexvar | homalt | 0.0000 | 0.0000 | 99.6390 | 90.5814 | 0 | 0 | 276 | 1 | 0 | 0.0000 | |
jpowers-varprowl | INDEL | I1_5 | HG002complexvar | * | 92.7158 | 90.8192 | 94.6934 | 52.3150 | 30300 | 3063 | 30175 | 1691 | 1600 | 94.6186 | |
jpowers-varprowl | INDEL | I1_5 | HG002complexvar | het | 94.3417 | 95.4478 | 93.2609 | 57.7585 | 17361 | 828 | 17340 | 1253 | 1221 | 97.4461 | |
jpowers-varprowl | INDEL | I1_5 | HG002complexvar | hetalt | 0.0000 | 2.5492 | 0.0000 | 0.0000 | 44 | 1682 | 0 | 0 | 0 | ||
jpowers-varprowl | INDEL | I1_5 | HG002complexvar | homalt | 96.2923 | 95.8879 | 96.7001 | 41.8106 | 12895 | 553 | 12835 | 438 | 379 | 86.5297 | |
jpowers-varprowl | INDEL | I6_15 | HG002complexvar | * | 68.3061 | 61.4775 | 76.8413 | 54.9585 | 2946 | 1846 | 2963 | 893 | 875 | 97.9843 | |
jpowers-varprowl | INDEL | I6_15 | HG002complexvar | het | 76.9804 | 82.9299 | 71.8274 | 56.3262 | 1953 | 402 | 1981 | 777 | 772 | 99.3565 | |
jpowers-varprowl | INDEL | I6_15 | HG002complexvar | hetalt | 0.0000 | 1.3083 | 0.0000 | 0.0000 | 16 | 1207 | 0 | 0 | 0 | ||
jpowers-varprowl | INDEL | I6_15 | HG002complexvar | homalt | 84.7204 | 80.4778 | 89.4353 | 51.1131 | 977 | 237 | 982 | 116 | 103 | 88.7931 | |
jpowers-varprowl | SNP | ti | HG002complexvar | * | 99.5182 | 99.3169 | 99.7203 | 18.7923 | 504961 | 3473 | 505119 | 1417 | 799 | 56.3867 | |
jpowers-varprowl | SNP | ti | HG002complexvar | het | 99.4252 | 98.9938 | 99.8603 | 18.1914 | 311597 | 3167 | 311707 | 436 | 90 | 20.6422 | |
jpowers-varprowl | SNP | ti | HG002complexvar | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 207 | 0 | 0 | 0 | |||
jpowers-varprowl | SNP | ti | HG002complexvar | homalt | 99.7216 | 99.9488 | 99.4954 | 19.7390 | 193364 | 99 | 193412 | 981 | 709 | 72.2732 | |
ltrigg-rtg1 | INDEL | * | HG002complexvar | * | 98.8636 | 98.1465 | 99.5912 | 55.0476 | 75511 | 1426 | 75278 | 309 | 190 | 61.4887 | |
ltrigg-rtg1 | INDEL | * | HG002complexvar | het | 98.9136 | 98.2515 | 99.5847 | 53.0906 | 45404 | 808 | 44604 | 186 | 79 | 42.4731 | |
ltrigg-rtg1 | INDEL | * | HG002complexvar | hetalt | 94.3098 | 90.8354 | 98.0606 | 74.9985 | 3360 | 339 | 4045 | 80 | 79 | 98.7500 | |
ltrigg-rtg1 | INDEL | * | HG002complexvar | homalt | 99.4013 | 98.9677 | 99.8388 | 52.4987 | 26747 | 279 | 26629 | 43 | 32 | 74.4186 | |
ltrigg-rtg1 | INDEL | C16_PLUS | HG002complexvar | * | 0.0000 | 0.0000 | 95.5224 | 89.8792 | 0 | 0 | 64 | 3 | 3 | 100.0000 | |
ltrigg-rtg1 | INDEL | C16_PLUS | HG002complexvar | het | 0.0000 | 0.0000 | 95.4545 | 90.4762 | 0 | 0 | 21 | 1 | 1 | 100.0000 | |
ltrigg-rtg1 | INDEL | C16_PLUS | HG002complexvar | hetalt | 0.0000 | 0.0000 | 96.2963 | 87.6147 | 0 | 0 | 26 | 1 | 1 | 100.0000 | |
ltrigg-rtg1 | INDEL | C16_PLUS | HG002complexvar | homalt | 0.0000 | 0.0000 | 94.4444 | 91.5493 | 0 | 0 | 17 | 1 | 1 | 100.0000 | |
jmaeng-gatk | INDEL | D6_15 | HG002complexvar | * | 97.9225 | 97.3595 | 98.4921 | 58.5358 | 5162 | 140 | 5160 | 79 | 74 | 93.6709 | |
jmaeng-gatk | INDEL | D6_15 | HG002complexvar | het | 98.8845 | 98.7179 | 99.0517 | 59.4483 | 3080 | 40 | 3029 | 29 | 25 | 86.2069 | |
jmaeng-gatk | INDEL | D6_15 | HG002complexvar | hetalt | 93.2190 | 90.3258 | 96.3037 | 47.2880 | 915 | 98 | 964 | 37 | 37 | 100.0000 | |
jmaeng-gatk | INDEL | D6_15 | HG002complexvar | homalt | 99.3614 | 99.8289 | 98.8983 | 63.0673 | 1167 | 2 | 1167 | 13 | 12 | 92.3077 | |
jmaeng-gatk | SNP | * | HG002complexvar | * | 99.5566 | 99.1508 | 99.9656 | 19.5091 | 747975 | 6406 | 747823 | 257 | 106 | 41.2451 | |
jmaeng-gatk | SNP | * | HG002complexvar | het | 99.7155 | 99.4778 | 99.9544 | 19.1665 | 463066 | 2431 | 462938 | 211 | 65 | 30.8057 |