PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubset GenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
80551-80600 / 86044 show all
ltrigg-rtg2INDELC1_5HG002complexvarhomalt
0.0000
0.0000
99.6403
90.3972
0027710
0.0000
ltrigg-rtg2INDELC6_15HG002complexvar*
99.2126
100.0000
98.4375
83.7150
4037862
33.3333
ltrigg-rtg2INDELC6_15HG002complexvarhet
99.1354
100.0000
98.2857
78.8392
4017230
0.0000
ltrigg-rtg2INDELC6_15HG002complexvarhetalt
0.0000
0.0000
98.7179
82.7624
0015421
50.0000
ltrigg-rtg2INDELC6_15HG002complexvarhomalt
0.0000
0.0000
98.1132
91.5335
005211
100.0000
ltrigg-rtg1SNPtiHG002complexvar*
99.8532
99.7400
99.9667
17.5108
507114132250703416980
47.3373
ltrigg-rtg1SNPtiHG002complexvarhet
99.8233
99.6823
99.9646
17.0356
313766100031377811123
20.7207
ltrigg-rtg1SNPtiHG002complexvarhetalt
99.0419
99.5169
98.5714
36.3636
206120733
100.0000
ltrigg-rtg1SNPtiHG002complexvarhomalt
99.9028
99.8341
99.9715
18.2456
1931423211930495554
98.1818
ltrigg-rtg2INDELD1_5HG002complexvar*
99.1938
98.8812
99.5083
54.2253
3234936632179159100
62.8931
ltrigg-rtg2INDELD1_5HG002complexvarhet
99.3002
99.0946
99.5066
51.3766
205771882036810144
43.5644
ltrigg-rtg2INDELD1_5HG002complexvarhetalt
95.1803
94.0828
96.3038
77.4750
12728014335554
98.1818
ltrigg-rtg2INDELD1_5HG002complexvarhomalt
99.5212
99.0753
99.9711
52.6911
10500981037832
66.6667
ltrigg-rtg2INDELC16_PLUSHG002complexvar*
0.0000
0.0000
94.2029
89.5928
006543
75.0000
ltrigg-rtg2INDELC16_PLUSHG002complexvarhet
0.0000
0.0000
91.3043
89.9123
002121
50.0000
ltrigg-rtg2INDELC16_PLUSHG002complexvarhetalt
0.0000
0.0000
96.4286
87.8261
002711
100.0000
ltrigg-rtg2INDELC16_PLUSHG002complexvarhomalt
0.0000
0.0000
94.4444
91.2195
001711
100.0000
ltrigg-rtg2INDELC1_5HG002complexvar*
91.9145
85.7143
99.0816
88.0866
6197193
33.3333
ltrigg-rtg1SNPtvHG002complexvar*
99.8396
99.7384
99.9410
21.7226
24551164424576814559
40.6897
ltrigg-rtg1SNPtvHG002complexvarhet
99.7971
99.6716
99.9230
21.1569
15023949515045711636
31.0345
ltrigg-rtg1SNPtvHG002complexvarhetalt
98.8749
99.0323
98.7179
36.8421
307330844
100.0000
ltrigg-rtg1SNPtvHG002complexvarhomalt
99.9101
99.8465
99.9737
22.5425
94965146950032519
76.0000
ltrigg-rtg2INDEL*HG002complexvar*
98.9919
98.4780
99.5112
54.8986
75766117175523371227
61.1860
ltrigg-rtg2INDEL*HG002complexvarhet
99.0269
98.6108
99.4465
53.1360
4557064244739249116
46.5863
ltrigg-rtg2INDEL*HG002complexvarhetalt
95.5730
93.2685
97.9943
75.0000
345024941538584
98.8235
ltrigg-rtg2INDEL*HG002complexvarhomalt
99.4106
98.9640
99.8613
51.7784
26746280266313727
72.9730
ltrigg-rtg2INDELD16_PLUSHG002complexvar*
94.7987
91.4790
98.3685
55.6259
150314014472419
79.1667
ltrigg-rtg2INDELD16_PLUSHG002complexvarhet
95.2931
91.7796
99.0863
53.6689
10169197694
44.4444
ltrigg-rtg2INDELD16_PLUSHG002complexvarhetalt
90.0287
86.6397
93.6937
56.8932
214332081414
100.0000
ltrigg-rtg2INDELD16_PLUSHG002complexvarhomalt
96.9739
94.4637
99.6212
60.8309
2731626311
100.0000
jpowers-varprowlINDELC16_PLUSHG002complexvar*
0.0000
0.0000
0.0000
00000
jpowers-varprowlINDELC16_PLUSHG002complexvarhet
0.0000
0.0000
0.0000
00000
jpowers-varprowlINDELC16_PLUSHG002complexvarhetalt
0.0000
0.0000
0.0000
00000
jpowers-varprowlINDELC16_PLUSHG002complexvarhomalt
0.0000
0.0000
0.0000
00000
jpowers-varprowlINDELD16_PLUSHG002complexvar*
75.6960
71.3329
80.6276
65.0203
11724711182284273
96.1268
jpowers-varprowlINDELD16_PLUSHG002complexvarhet
82.6837
86.0885
79.5380
63.2839
953154964248240
96.7742
jpowers-varprowlINDELD16_PLUSHG002complexvarhetalt
0.0000
0.8097
0.0000
0.0000
2245000
jpowers-varprowlINDELD16_PLUSHG002complexvarhomalt
80.0982
75.0865
85.8268
71.4607
217722183633
91.6667
jpowers-varprowlINDELD1_5HG002complexvar*
93.8573
92.4805
95.2757
55.2360
3025524603013014941377
92.1687
jpowers-varprowlINDELD1_5HG002complexvarhet
95.6155
96.8360
94.4254
57.0236
201086572007211851127
95.1055
jpowers-varprowlINDELD1_5HG002complexvarhetalt
0.0000
1.9970
0.0000
0.0000
271325000
jpowers-varprowlINDELD1_5HG002complexvarhomalt
96.2485
95.4897
97.0194
51.0621
1012047810058309250
80.9061
jpowers-varprowlINDELD6_15HG002complexvar*
74.6372
70.9355
78.7466
57.5873
3761154137571014966
95.2663
jpowers-varprowlINDELD6_15HG002complexvarhet
82.3223
90.1603
75.7381
57.2412
28133072822904873
96.5708
jpowers-varprowlINDELD6_15HG002complexvarhetalt
0.0000
1.5795
0.0000
0.0000
16997000
jpowers-varprowlINDELD6_15HG002complexvarhomalt
84.3192
79.7263
89.4737
58.7771
93223793511093
84.5455
jpowers-varprowlINDELI16_PLUSHG002complexvar*
64.1165
56.5317
74.0519
63.2294
740569742260258
99.2308
jpowers-varprowlINDELI16_PLUSHG002complexvarhet
71.5885
75.0376
68.4426
63.7803
499166501231229
99.1342
jpowers-varprowlINDELI16_PLUSHG002complexvarhetalt
0.0000
0.8955
0.0000
0.0000
3332000
jpowers-varprowlINDELI16_PLUSHG002complexvarhomalt
82.6907
77.0227
89.2593
61.6477
238712412929
100.0000