PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
80501-80550 / 86044 show all | |||||||||||||||
jli-custom | INDEL | C6_15 | HG002complexvar | * | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 4 | 0 | 0 | 0 | 0 | ||
jli-custom | INDEL | C6_15 | HG002complexvar | het | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 4 | 0 | 0 | 0 | 0 | ||
jli-custom | INDEL | C6_15 | HG002complexvar | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
jli-custom | INDEL | C6_15 | HG002complexvar | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
jli-custom | INDEL | D16_PLUS | HG002complexvar | * | 96.9398 | 95.6786 | 98.2346 | 63.8971 | 1572 | 71 | 1558 | 28 | 21 | 75.0000 | |
jli-custom | INDEL | D16_PLUS | HG002complexvar | het | 97.1408 | 95.7543 | 98.5680 | 65.7400 | 1060 | 47 | 826 | 12 | 6 | 50.0000 | |
jli-custom | INDEL | D16_PLUS | HG002complexvar | hetalt | 94.0295 | 91.0931 | 97.1616 | 45.1497 | 225 | 22 | 445 | 13 | 13 | 100.0000 | |
jli-custom | INDEL | D16_PLUS | HG002complexvar | homalt | 99.1364 | 99.3080 | 98.9655 | 73.9209 | 287 | 2 | 287 | 3 | 2 | 66.6667 | |
jli-custom | INDEL | D1_5 | HG002complexvar | * | 99.5191 | 99.2725 | 99.7668 | 57.5505 | 32477 | 238 | 32518 | 76 | 59 | 77.6316 | |
jli-custom | INDEL | D1_5 | HG002complexvar | het | 99.7322 | 99.5618 | 99.9033 | 54.7904 | 20674 | 91 | 20667 | 20 | 6 | 30.0000 | |
jli-custom | INDEL | D1_5 | HG002complexvar | hetalt | 93.0817 | 89.7929 | 96.6206 | 73.4123 | 1214 | 138 | 1258 | 44 | 43 | 97.7273 | |
jli-custom | INDEL | D1_5 | HG002complexvar | homalt | 99.9010 | 99.9151 | 99.8868 | 59.4114 | 10589 | 9 | 10593 | 12 | 10 | 83.3333 | |
jli-custom | INDEL | I1_5 | HG002complexvar | * | 99.4264 | 98.9689 | 99.8882 | 55.8919 | 33019 | 344 | 33052 | 37 | 27 | 72.9730 | |
jli-custom | INDEL | I1_5 | HG002complexvar | het | 99.6665 | 99.4282 | 99.9059 | 56.5291 | 18085 | 104 | 18053 | 17 | 9 | 52.9412 | |
jli-custom | INDEL | I1_5 | HG002complexvar | hetalt | 92.7842 | 86.7323 | 99.7439 | 70.2420 | 1497 | 229 | 1558 | 4 | 4 | 100.0000 | |
jli-custom | INDEL | I1_5 | HG002complexvar | homalt | 99.8996 | 99.9182 | 99.8811 | 52.2818 | 13437 | 11 | 13441 | 16 | 14 | 87.5000 | |
mlin-fermikit | INDEL | * | HG002complexvar | * | 95.4305 | 94.5346 | 96.3436 | 54.3245 | 72733 | 4205 | 72356 | 2746 | 2618 | 95.3387 | |
mlin-fermikit | INDEL | * | HG002complexvar | het | 95.8810 | 94.8801 | 96.9032 | 52.4432 | 43846 | 2366 | 43401 | 1387 | 1299 | 93.6554 | |
mlin-fermikit | INDEL | * | HG002complexvar | hetalt | 86.4462 | 77.1560 | 98.2798 | 67.7484 | 2854 | 845 | 3028 | 53 | 52 | 98.1132 | |
mlin-fermikit | INDEL | * | HG002complexvar | homalt | 95.7600 | 96.3222 | 95.2043 | 55.1307 | 26033 | 994 | 25927 | 1306 | 1267 | 97.0138 | |
ltrigg-rtg2 | SNP | ti | HG002complexvar | * | 99.8779 | 99.7988 | 99.9570 | 17.4272 | 507413 | 1023 | 507316 | 218 | 98 | 44.9541 | |
ltrigg-rtg2 | SNP | ti | HG002complexvar | het | 99.8501 | 99.7528 | 99.9475 | 16.9710 | 313988 | 778 | 313992 | 165 | 46 | 27.8788 | |
ltrigg-rtg2 | SNP | ti | HG002complexvar | hetalt | 99.0419 | 99.5169 | 98.5714 | 37.5000 | 206 | 1 | 207 | 3 | 3 | 100.0000 | |
ltrigg-rtg2 | SNP | ti | HG002complexvar | homalt | 99.9240 | 99.8739 | 99.9741 | 18.1301 | 193219 | 244 | 193117 | 50 | 49 | 98.0000 | |
ltrigg-rtg2 | INDEL | D6_15 | HG002complexvar | * | 97.7900 | 96.9257 | 98.6698 | 51.5393 | 5139 | 163 | 4970 | 67 | 50 | 74.6269 | |
ltrigg-rtg2 | INDEL | D6_15 | HG002complexvar | het | 98.5457 | 97.9487 | 99.1499 | 50.4465 | 3056 | 64 | 2916 | 25 | 8 | 32.0000 | |
ltrigg-rtg2 | INDEL | D6_15 | HG002complexvar | hetalt | 94.0012 | 92.3001 | 95.7661 | 55.0113 | 935 | 78 | 950 | 42 | 42 | 100.0000 | |
ltrigg-rtg2 | INDEL | D6_15 | HG002complexvar | homalt | 99.0937 | 98.2036 | 100.0000 | 51.0204 | 1148 | 21 | 1104 | 0 | 0 | ||
ltrigg-rtg2 | INDEL | I6_15 | HG002complexvar | * | 98.0543 | 96.8698 | 99.2681 | 50.7658 | 4642 | 150 | 4340 | 32 | 18 | 56.2500 | |
ltrigg-rtg2 | INDEL | I6_15 | HG002complexvar | het | 98.2137 | 97.4098 | 99.0310 | 49.5355 | 2294 | 61 | 2044 | 20 | 9 | 45.0000 | |
ltrigg-rtg2 | INDEL | I6_15 | HG002complexvar | hetalt | 96.8057 | 94.1946 | 99.5656 | 57.9927 | 1152 | 71 | 1146 | 5 | 5 | 100.0000 | |
ltrigg-rtg2 | INDEL | I6_15 | HG002complexvar | homalt | 98.9542 | 98.5173 | 99.3950 | 43.5610 | 1196 | 18 | 1150 | 7 | 4 | 57.1429 | |
ltrigg-rtg2 | SNP | * | HG002complexvar | * | 99.8684 | 99.7896 | 99.9473 | 18.8678 | 752797 | 1587 | 752943 | 397 | 167 | 42.0655 | |
ltrigg-rtg2 | SNP | * | HG002complexvar | het | 99.8358 | 99.7414 | 99.9305 | 18.3888 | 464296 | 1204 | 464515 | 323 | 94 | 29.1022 | |
ltrigg-rtg2 | SNP | * | HG002complexvar | hetalt | 99.0410 | 99.6774 | 98.4127 | 37.6238 | 309 | 1 | 310 | 5 | 5 | 100.0000 | |
ltrigg-rtg2 | SNP | * | HG002complexvar | homalt | 99.9218 | 99.8676 | 99.9761 | 19.6026 | 288192 | 382 | 288118 | 69 | 68 | 98.5507 | |
ltrigg-rtg2 | INDEL | I16_PLUS | HG002complexvar | * | 92.2852 | 87.0130 | 98.2375 | 52.4691 | 1139 | 170 | 1059 | 19 | 16 | 84.2105 | |
ltrigg-rtg2 | INDEL | I16_PLUS | HG002complexvar | het | 91.9911 | 86.1654 | 98.6616 | 46.5235 | 573 | 92 | 516 | 7 | 4 | 57.1429 | |
ltrigg-rtg2 | INDEL | I16_PLUS | HG002complexvar | hetalt | 89.8660 | 82.0896 | 99.2701 | 60.2899 | 275 | 60 | 272 | 2 | 2 | 100.0000 | |
ltrigg-rtg2 | INDEL | I16_PLUS | HG002complexvar | homalt | 95.2945 | 94.1748 | 96.4413 | 53.1667 | 291 | 18 | 271 | 10 | 10 | 100.0000 | |
ltrigg-rtg2 | INDEL | I1_5 | HG002complexvar | * | 99.3818 | 99.0798 | 99.6856 | 52.9504 | 33055 | 307 | 32342 | 102 | 66 | 64.7059 | |
ltrigg-rtg2 | INDEL | I1_5 | HG002complexvar | het | 99.3853 | 99.2028 | 99.5685 | 52.2881 | 18044 | 145 | 17305 | 75 | 44 | 58.6667 | |
ltrigg-rtg2 | INDEL | I1_5 | HG002complexvar | hetalt | 98.0883 | 96.9293 | 99.2754 | 77.2008 | 1673 | 53 | 1918 | 14 | 14 | 100.0000 | |
ltrigg-rtg2 | INDEL | I1_5 | HG002complexvar | homalt | 99.5439 | 99.1894 | 99.9010 | 45.4107 | 13338 | 109 | 13119 | 13 | 8 | 61.5385 | |
ltrigg-rtg2 | SNP | tv | HG002complexvar | * | 99.8482 | 99.7705 | 99.9260 | 21.7021 | 245590 | 565 | 245834 | 182 | 72 | 39.5604 | |
ltrigg-rtg2 | SNP | tv | HG002complexvar | het | 99.8062 | 99.7174 | 99.8951 | 21.1944 | 150308 | 426 | 150523 | 158 | 48 | 30.3797 | |
ltrigg-rtg2 | SNP | tv | HG002complexvar | hetalt | 99.0410 | 99.6774 | 98.4127 | 37.6238 | 309 | 1 | 310 | 5 | 5 | 100.0000 | |
ltrigg-rtg2 | SNP | tv | HG002complexvar | homalt | 99.9174 | 99.8549 | 99.9800 | 22.4289 | 94973 | 138 | 95001 | 19 | 19 | 100.0000 | |
ltrigg-rtg2 | INDEL | C1_5 | HG002complexvar | het | 91.6047 | 85.7143 | 98.3645 | 86.9869 | 6 | 1 | 421 | 7 | 2 | 28.5714 | |
ltrigg-rtg2 | INDEL | C1_5 | HG002complexvar | hetalt | 0.0000 | 0.0000 | 99.6350 | 86.5818 | 0 | 0 | 273 | 1 | 1 | 100.0000 |